Variant report

Variant	rs10786148
Chromosome Location	chr10:95655566-95655567
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:95655267..95660464-chr10:95662376..95665623,6	K562	blood:
2	chr10:95655301..95659438-chr10:95663461..95667580,3	MCF-7	breast:
3	chr10:95647063..95650467-chr10:95654358..95657175,3	MCF-7	breast:
4	chr10:95459724..95462239-chr10:95654343..95656368,2	K562	blood:
5	chr10:95576767..95579702-chr10:95653982..95656369,2	K562	blood:

Extended variants
information (count: 122 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10430654	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10430655	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1046414	1.00[JPT][hapmap]
rs10748617	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10786140	0.91[ASN][1000 genomes]
rs10786141	0.96[ASN][1000 genomes]
rs10786143	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10882345	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10882346	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10882347	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10882348	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10882349	0.90[ASN][1000 genomes]
rs10882352	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10882353	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10882354	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10882360	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882361	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882363	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882364	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882365	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11187684	0.94[ASN][1000 genomes]
rs11187692	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11187693	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11187695	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11187697	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11187698	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11187700	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11187710	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11187718	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11187724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187725	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187729	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1124885	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1147649	0.84[EUR][1000 genomes]
rs1147650	0.84[EUR][1000 genomes]
rs1147651	0.84[EUR][1000 genomes]
rs1147652	0.85[EUR][1000 genomes]
rs12098741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1223467	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1223468	0.83[EUR][1000 genomes]
rs1223469	0.83[EUR][1000 genomes]
rs1223470	0.81[EUR][1000 genomes]
rs1223471	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1223472	0.80[EUR][1000 genomes]
rs1223496	0.82[EUR][1000 genomes]
rs1223497	0.81[EUR][1000 genomes]
rs1364823	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17412233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17412253	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1986401	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2104369	0.89[ASN][1000 genomes]
rs2113956	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422330	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2422331	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901715	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3088126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35298830	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs35640487	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4917955	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4917956	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4917958	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4919555	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4919557	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4919558	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4919560	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4919568	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58055107	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs60994317	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6583920	1.00[JPT][hapmap]
rs7076661	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7086303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7088236	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090399	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7092643	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7092830	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7092839	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7092860	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7093763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7094460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7094548	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7094662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7094961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7097533	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7100676	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7898970	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899974	0.84[ASN][1000 genomes]
rs7900260	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7904095	0.96[ASN][1000 genomes]
rs7905161	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7906044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7906262	0.91[ASN][1000 genomes]
rs7910246	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7913113	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7913175	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7913189	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7913238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913342	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913668	1.00[JPT][hapmap]
rs7917744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921176	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7921454	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7922581	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7924240	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs829230	0.84[EUR][1000 genomes]
rs829231	0.84[EUR][1000 genomes]
rs829233	0.84[EUR][1000 genomes]
rs829234	0.82[EUR][1000 genomes]
rs829235	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs829236	0.84[EUR][1000 genomes]
rs829237	0.84[EUR][1000 genomes]
rs829238	0.81[EUR][1000 genomes]
rs829239	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs829240	0.84[EUR][1000 genomes]
rs829241	0.84[EUR][1000 genomes]
rs829242	0.84[EUR][1000 genomes]
rs829244	0.84[EUR][1000 genomes]
rs829245	0.80[EUR][1000 genomes]
rs919003	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs919004	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs950085	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs950086	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9787520	0.96[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10786148	BTAF1	cis	parietal	SCAN
rs10786148	SLC35G1	cis	lung	GTEx

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95653200-95655600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr10:95653200-95655600	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr10:95653200-95655800	Active TSS	Fetal Intestine Small	intestine
4	chr10:95654200-95655600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
5	chr10:95654200-95655600	Flanking Active TSS	GM12878-XiMat	blood
6	chr10:95654400-95655600	Flanking Active TSS	Duodenum Mucosa	Duodenum
7	chr10:95654400-95660600	Weak transcription	Aorta	Aorta
8	chr10:95654600-95655600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:95654600-95655600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr10:95654600-95655600	Flanking Active TSS	K562	blood
11	chr10:95654600-95657200	Weak transcription	Small Intestine	intestine
12	chr10:95654800-95655600	Enhancers	Thymus	Thymus
13	chr10:95654800-95655600	Enhancers	HepG2	liver
14	chr10:95654800-95655800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:95654800-95655800	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr10:95654800-95655800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr10:95654800-95660600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:95654800-95664600	Weak transcription	Gastric	stomach
19	chr10:95654800-95667800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr10:95654800-95671400	Weak transcription	NH-A	brain
21	chr10:95654800-95673600	Weak transcription	NHDF-Ad	bronchial
22	chr10:95654800-95676200	Weak transcription	Fetal Kidney	kidney
23	chr10:95654800-95676800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr10:95654800-95677000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr10:95655000-95655600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:95655000-95655600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
27	chr10:95655000-95655600	Enhancers	Liver	Liver
28	chr10:95655000-95655600	Enhancers	Fetal Lung	lung
29	chr10:95655000-95655800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
30	chr10:95655000-95655800	Enhancers	Adipose Nuclei	Adipose
31	chr10:95655000-95655800	Active TSS	Fetal Intestine Large	intestine
32	chr10:95655000-95655800	Enhancers	Ovary	ovary
33	chr10:95655000-95656000	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr10:95655000-95656200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr10:95655000-95656400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:95655000-95656800	Weak transcription	Lung	lung
37	chr10:95655000-95656800	Weak transcription	Pancreas	Pancrea
38	chr10:95655000-95656800	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr10:95655000-95657200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr10:95655000-95657400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr10:95655000-95659200	Weak transcription	Left Ventricle	heart
42	chr10:95655000-95660400	Weak transcription	HSMM	muscle
43	chr10:95655000-95660600	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr10:95655000-95662600	Weak transcription	Esophagus	oesophagus
45	chr10:95655000-95664000	Weak transcription	HUVEC	blood vessel
46	chr10:95655000-95665200	Weak transcription	NHEK	skin
47	chr10:95655000-95666000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr10:95655000-95666800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr10:95655000-95667000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr10:95655000-95668000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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