Variant report

Variant	rs1223468
Chromosome Location	chr10:95678793-95678794
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10786148	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs10882362	1.00[CHB][hapmap]
rs10882363	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10882364	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs10882365	0.91[EUR][1000 genomes]
rs11187721	1.00[CHB][hapmap]
rs11187723	1.00[CHB][hapmap]
rs11187724	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs11187725	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs11187728	1.00[CHB][hapmap]
rs11187729	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1124885	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1147649	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1147650	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1147651	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1147652	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12098741	0.92[CEU][hapmap]
rs1223467	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1223469	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1223470	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1223471	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1223472	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1223496	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1223497	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17412233	0.92[CEU][hapmap]
rs2113955	1.00[CHB][hapmap]
rs2113956	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2422331	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3088126	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs4917956	0.85[CEU][hapmap]
rs7086303	0.93[CEU][hapmap]
rs7088236	0.93[CEU][hapmap]
rs7093763	0.93[CEU][hapmap]
rs7094460	0.93[CEU][hapmap]
rs7094662	0.92[CEU][hapmap]
rs7094961	0.93[CEU][hapmap]
rs7898970	0.92[CEU][hapmap]
rs7906044	0.92[CEU][hapmap]
rs7910246	0.86[CEU][hapmap]
rs7913238	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs7913342	0.85[EUR][1000 genomes]
rs7917744	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs7921454	0.85[CEU][hapmap]
rs7922581	0.86[CEU][hapmap]
rs829230	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs829231	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs829233	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs829234	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs829235	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs829236	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs829237	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs829238	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs829239	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs829240	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs829241	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs829242	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs829243	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs829244	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs829245	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95657400-95689200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:95668800-95679000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:95668800-95686000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:95669000-95689400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:95673000-95687000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:95673200-95680800	Weak transcription	Primary T cells from cord blood	blood
7	chr10:95677000-95684400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:95677400-95689000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:95677600-95678800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:95677600-95680600	Weak transcription	Fetal Intestine Large	intestine
11	chr10:95677800-95681600	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:95677800-95686800	Weak transcription	Fetal Intestine Small	intestine
13	chr10:95678000-95678800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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