Variant report

Variant	rs829237
Chromosome Location	chr10:95686581-95686582
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10786148	0.92[CEU][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs10882362	1.00[CHB][hapmap]
rs10882363	0.86[EUR][1000 genomes]
rs10882364	0.92[CEU][hapmap];0.95[GIH][hapmap];0.87[MEX][hapmap];0.82[MKK][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs10882365	0.92[EUR][1000 genomes]
rs11187721	1.00[CHB][hapmap]
rs11187723	1.00[CHB][hapmap]
rs11187724	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs11187725	0.92[CEU][hapmap];0.95[GIH][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs11187728	1.00[CHB][hapmap]
rs11187729	0.87[EUR][1000 genomes]
rs1124885	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1147649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147650	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1147651	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1147652	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12098741	0.92[CEU][hapmap];0.88[GIH][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap]
rs1223467	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1223468	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1223469	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1223470	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1223471	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1223472	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1223496	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1223497	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17412233	0.92[CEU][hapmap];0.80[GIH][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap]
rs2113955	1.00[CHB][hapmap]
rs2113956	0.87[EUR][1000 genomes]
rs2422331	0.87[EUR][1000 genomes]
rs3088126	0.92[CEU][hapmap];0.98[GIH][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs4917956	0.85[CEU][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap]
rs7086303	0.92[CEU][hapmap]
rs7088236	0.92[CEU][hapmap]
rs7093763	0.92[CEU][hapmap]
rs7094460	0.92[CEU][hapmap]
rs7094662	0.92[CEU][hapmap]
rs7094961	0.92[CEU][hapmap]
rs7898970	0.92[CEU][hapmap];0.93[GIH][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap]
rs7906044	0.92[CEU][hapmap]
rs7910246	0.85[CEU][hapmap]
rs7913238	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs7913342	0.86[EUR][1000 genomes]
rs7917744	0.92[CEU][hapmap];0.95[GIH][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs7921454	0.85[CEU][hapmap]
rs7922581	0.85[CEU][hapmap]
rs829230	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829231	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829234	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs829235	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829238	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs829239	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829240	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829241	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829242	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829243	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs829244	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829245	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs829237	BTAF1	cis	parietal	SCAN
rs829237	CC2D2B	cis	parietal	SCAN
rs829237	RPL13AP5	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95657400-95689200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:95669000-95689400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:95673000-95687000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:95677400-95689000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:95677800-95686800	Weak transcription	Fetal Intestine Small	intestine
6	chr10:95685400-95687400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr10:95686200-95686600	Enhancers	HSMMtube	muscle
8	chr10:95686200-95686800	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links