Variant report

Variant	rs10882365
Chromosome Location	chr10:95672409-95672410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10786148	0.92[CEU][hapmap];0.93[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10882360	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10882361	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10882362	1.00[CHB][hapmap]
rs10882363	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10882364	0.92[CEU][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11187718	0.84[EUR][1000 genomes]
rs11187721	1.00[CHB][hapmap]
rs11187723	1.00[CHB][hapmap]
rs11187724	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11187725	0.92[CEU][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11187728	1.00[CHB][hapmap]
rs11187729	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1124885	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1147649	0.92[EUR][1000 genomes]
rs1147650	0.92[EUR][1000 genomes]
rs1147651	0.92[EUR][1000 genomes]
rs1147652	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12098741	0.92[CEU][hapmap];0.88[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs1223467	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1223468	0.91[EUR][1000 genomes]
rs1223469	0.91[EUR][1000 genomes]
rs1223470	0.90[EUR][1000 genomes]
rs1223471	0.92[EUR][1000 genomes]
rs1223472	0.88[EUR][1000 genomes]
rs1223496	0.90[EUR][1000 genomes]
rs1223497	0.90[EUR][1000 genomes]
rs1364823	0.83[EUR][1000 genomes]
rs17412233	0.92[CEU][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap]
rs2113955	1.00[CHB][hapmap]
rs2113956	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2422330	0.83[EUR][1000 genomes]
rs2422331	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3088126	0.92[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4917955	0.81[EUR][1000 genomes]
rs4917956	0.85[CEU][hapmap];0.90[GIH][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4917958	0.84[EUR][1000 genomes]
rs7086303	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs7088236	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs7093763	0.92[CEU][hapmap]
rs7094460	0.92[CEU][hapmap]
rs7094662	0.92[CEU][hapmap]
rs7094961	0.92[CEU][hapmap]
rs7100676	0.82[EUR][1000 genomes]
rs7898970	0.92[CEU][hapmap];0.88[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7905161	0.84[EUR][1000 genomes]
rs7906044	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs7910246	0.85[CEU][hapmap]
rs7913238	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7913342	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7917744	0.92[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7921454	0.85[CEU][hapmap]
rs7922581	0.85[CEU][hapmap]
rs829230	0.92[EUR][1000 genomes]
rs829231	0.92[EUR][1000 genomes]
rs829233	0.92[EUR][1000 genomes]
rs829234	0.90[EUR][1000 genomes]
rs829235	0.92[EUR][1000 genomes]
rs829236	0.92[EUR][1000 genomes]
rs829237	0.92[EUR][1000 genomes]
rs829238	0.87[EUR][1000 genomes]
rs829239	0.92[EUR][1000 genomes]
rs829240	0.92[EUR][1000 genomes]
rs829241	0.92[EUR][1000 genomes]
rs829242	0.92[EUR][1000 genomes]
rs829243	0.83[EUR][1000 genomes]
rs829244	0.92[EUR][1000 genomes]
rs829245	0.89[EUR][1000 genomes]
rs919004	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10882365	CC2D2B	cis	parietal	SCAN
rs10882365	RPL13AP5	cis	cerebellum	SCAN
rs10882365	BTAF1	cis	parietal	SCAN

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95654800-95673600	Weak transcription	NHDF-Ad	bronchial
2	chr10:95654800-95676200	Weak transcription	Fetal Kidney	kidney
3	chr10:95654800-95676800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:95654800-95677000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:95655000-95672800	Weak transcription	Psoas Muscle	Psoas
6	chr10:95655000-95674600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr10:95655000-95676600	Weak transcription	Fetal Stomach	stomach
8	chr10:95655200-95673400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:95655200-95673400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr10:95655200-95676200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:95655200-95676200	Weak transcription	Fetal Heart	heart
12	chr10:95655200-95676400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:95655200-95676600	Weak transcription	Brain Hippocampus Middle	brain
14	chr10:95655400-95676600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:95655400-95676800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:95655600-95674600	Weak transcription	Thymus	Thymus
17	chr10:95655600-95675400	Weak transcription	Fetal Lung	lung
18	chr10:95657200-95676600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr10:95657400-95689200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:95657600-95676600	Weak transcription	Right Atrium	heart
21	chr10:95658200-95676800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:95665000-95672800	Weak transcription	Gastric	stomach
23	chr10:95665800-95673400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr10:95665800-95676800	Weak transcription	Spleen	Spleen
25	chr10:95666200-95676800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:95666400-95676600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr10:95667000-95673400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:95667000-95675000	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr10:95667000-95676800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr10:95667200-95674400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr10:95667200-95675000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr10:95667400-95674400	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr10:95667400-95676400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr10:95667400-95676600	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr10:95667800-95675000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr10:95667800-95675200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr10:95667800-95676800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr10:95668000-95676000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:95668400-95676800	Weak transcription	Fetal Muscle Trunk	muscle
40	chr10:95668600-95673200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:95668600-95675000	Weak transcription	Hela-S3	cervix
42	chr10:95668600-95676600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr10:95668600-95676600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr10:95668600-95676600	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr10:95668600-95676600	Weak transcription	A549	lung
46	chr10:95668600-95676800	Weak transcription	HSMM	muscle
47	chr10:95668800-95672800	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr10:95668800-95673400	Weak transcription	Osteobl	bone
49	chr10:95668800-95674400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr10:95668800-95676200	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links