Variant report

Variant	rs829243
Chromosome Location	chr10:95688275-95688276
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10882365	0.83[EUR][1000 genomes]
rs1124885	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1147649	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1147650	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1147651	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1147652	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1223467	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1223468	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1223469	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1223470	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1223471	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1223472	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1223496	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1223497	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs829230	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs829231	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs829233	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs829234	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs829235	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs829236	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs829237	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs829238	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs829239	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs829240	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs829241	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs829242	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs829244	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs829245	0.87[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs829243	SLC35G1	cis	lung	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95657400-95689200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:95669000-95689400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:95677400-95689000	Weak transcription	Duodenum Mucosa	Duodenum

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