Variant report

Variant	rs896760
Chromosome Location	chr8:113518467-113518468
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10101060	1.00[JPT][hapmap]
rs10101978	0.81[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10101987	0.88[ASN][1000 genomes]
rs10105193	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs10110469	1.00[JPT][hapmap]
rs10110963	1.00[JPT][hapmap]
rs10112543	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs10112964	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1021438	0.82[CHB][hapmap]
rs10216803	0.82[CHB][hapmap]
rs10505174	0.82[CHB][hapmap]
rs11779203	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs11782110	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11782461	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11783041	0.88[CHB][hapmap]
rs11784468	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12334311	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12386777	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1377368	1.00[JPT][hapmap]
rs16883689	0.81[CHB][hapmap]
rs16883753	0.82[CHB][hapmap]
rs2198362	0.81[ASN][1000 genomes]
rs2354349	1.00[JPT][hapmap]
rs58552247	0.80[ASN][1000 genomes]
rs60989653	0.84[ASN][1000 genomes]
rs62516491	0.88[ASN][1000 genomes]
rs6469425	1.00[JPT][hapmap]
rs6981125	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs7006962	0.82[CHB][hapmap]
rs7835439	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7835735	0.82[CHB][hapmap]
rs7838822	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7838963	0.88[ASN][1000 genomes]
rs7839026	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs981692	1.00[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2755868	chr8:113282795-113634842	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2754232	chr8:113294967-113634842	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv831427	chr8:113494319-113699264	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113513400-113520400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:113513400-113520400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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