Variant report

Variant	rs10216803
Chromosome Location	chr8:113499341-113499342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10087242	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10092138	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10101060	0.89[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap]
rs10106343	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10107134	0.92[CEU][hapmap];0.86[CHB][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10108081	0.82[AMR][1000 genomes]
rs10109807	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10110469	1.00[YRI][hapmap]
rs10111988	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1020597	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1021438	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs10505173	0.90[MEX][hapmap];0.80[TSI][hapmap];0.82[AMR][1000 genomes]
rs10505174	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10505175	0.82[ASW][hapmap];0.93[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10505176	0.81[GIH][hapmap];0.86[MKK][hapmap]
rs1158895	0.86[MKK][hapmap];1.00[YRI][hapmap]
rs11775013	0.81[GIH][hapmap];0.86[MKK][hapmap]
rs11778155	1.00[YRI][hapmap]
rs11778209	0.81[GIH][hapmap];0.86[MKK][hapmap]
rs11778532	1.00[YRI][hapmap]
rs11779960	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11780166	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11783041	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11785270	1.00[YRI][hapmap]
rs11785419	0.81[GIH][hapmap];0.86[MKK][hapmap];0.81[TSI][hapmap]
rs11787085	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1319683	0.82[CHB][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13439841	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1352995	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1377368	0.81[JPT][hapmap];1.00[YRI][hapmap]
rs1388962	0.82[CEU][hapmap];0.82[CHB][hapmap];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1420857	1.00[YRI][hapmap]
rs1492675	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1548986	1.00[YRI][hapmap]
rs1563064	0.90[MEX][hapmap];0.80[TSI][hapmap];0.82[AMR][1000 genomes]
rs16883401	1.00[YRI][hapmap]
rs16883404	1.00[YRI][hapmap]
rs16883432	1.00[YRI][hapmap]
rs16883437	0.85[MKK][hapmap];1.00[YRI][hapmap]
rs16883454	1.00[YRI][hapmap]
rs16883506	0.81[GIH][hapmap];0.86[MKK][hapmap]
rs16883549	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs16883689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16883708	0.90[MEX][hapmap];0.80[TSI][hapmap];0.82[AMR][1000 genomes]
rs16883735	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16883753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1861755	1.00[YRI][hapmap]
rs1907802	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1993207	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2045033	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2123487	0.86[MEX][hapmap];0.80[TSI][hapmap];0.82[AMR][1000 genomes]
rs2123489	0.93[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2167777	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2353271	1.00[YRI][hapmap]
rs4363229	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5004568	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62514456	0.81[AMR][1000 genomes]
rs62516467	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62516475	0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62516479	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62516481	0.82[AMR][1000 genomes]
rs6415459	1.00[YRI][hapmap]
rs6981814	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs6986274	1.00[ASW][hapmap];0.93[CEU][hapmap];0.82[CHB][hapmap];0.80[CHD][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs7006962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7018185	0.87[AMR][1000 genomes]
rs7463918	1.00[YRI][hapmap]
rs7818544	0.82[AMR][1000 genomes]
rs7820539	0.82[AMR][1000 genomes]
rs7824183	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7825635	1.00[YRI][hapmap]
rs7826270	0.82[ASW][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap]
rs7832171	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7835735	0.93[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7836340	0.92[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7844829	1.00[YRI][hapmap]
rs896760	0.82[CHB][hapmap]
rs9297476	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2755868	chr8:113282795-113634842	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2754232	chr8:113294967-113634842	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv831427	chr8:113494319-113699264	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10216803	TRHR	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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