Variant report

Variant	rs6986274
Chromosome Location	chr8:113410972-113410973
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10092138	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10101060	0.89[LWK][hapmap];1.00[YRI][hapmap]
rs10107134	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10110469	1.00[YRI][hapmap]
rs10111988	0.93[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs1021438	0.93[CEU][hapmap];0.82[CHB][hapmap];0.80[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs10216803	1.00[ASW][hapmap];0.93[CEU][hapmap];0.82[CHB][hapmap];0.80[CHD][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs10505173	0.90[MEX][hapmap];0.81[TSI][hapmap]
rs10505174	0.93[CEU][hapmap];0.82[CHB][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs10505175	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[ASN][1000 genomes]
rs10505176	0.86[GIH][hapmap];0.86[MKK][hapmap]
rs10955618	0.81[GIH][hapmap]
rs1158895	0.84[GIH][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap]
rs11775013	0.86[GIH][hapmap];0.86[MKK][hapmap]
rs11778155	1.00[YRI][hapmap]
rs11778209	0.86[GIH][hapmap];0.86[MKK][hapmap]
rs11778532	1.00[YRI][hapmap]
rs11779960	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs11783041	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[AMR][1000 genomes]
rs11785270	1.00[YRI][hapmap]
rs11785419	0.86[GIH][hapmap];0.86[MKK][hapmap];0.81[TSI][hapmap]
rs11787085	0.84[AMR][1000 genomes]
rs1319683	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13439841	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1352995	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[YRI][hapmap]
rs1377368	1.00[YRI][hapmap]
rs1388962	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1420857	1.00[YRI][hapmap]
rs1492675	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1548986	1.00[YRI][hapmap]
rs1563064	0.90[MEX][hapmap];0.81[TSI][hapmap]
rs16883359	1.00[YRI][hapmap]
rs16883360	0.81[GIH][hapmap]
rs16883401	1.00[YRI][hapmap]
rs16883404	1.00[YRI][hapmap]
rs16883432	1.00[YRI][hapmap]
rs16883437	0.81[GIH][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap]
rs16883454	1.00[YRI][hapmap]
rs16883506	0.86[GIH][hapmap];0.86[MKK][hapmap]
rs16883549	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16883689	0.93[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs16883708	0.90[MEX][hapmap];0.81[TSI][hapmap]
rs16883753	0.93[CEU][hapmap];0.82[CHB][hapmap];0.80[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1861755	1.00[YRI][hapmap]
rs1993207	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[YRI][hapmap]
rs1994796	0.81[GIH][hapmap]
rs2045033	0.93[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2111426	0.81[GIH][hapmap]
rs2123487	0.86[MEX][hapmap];0.81[TSI][hapmap]
rs2123489	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2131297	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2167777	0.88[ASN][1000 genomes]
rs2201203	0.81[GIH][hapmap]
rs2353271	1.00[YRI][hapmap]
rs28661390	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28762986	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3922407	0.81[GIH][hapmap];1.00[YRI][hapmap]
rs4363229	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs5004568	0.81[AMR][1000 genomes]
rs5014673	0.80[ASN][1000 genomes]
rs62514456	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62516467	0.81[AMR][1000 genomes]
rs62516479	0.80[AMR][1000 genomes]
rs6415459	1.00[YRI][hapmap]
rs6981814	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7006962	0.93[CEU][hapmap];0.82[CHB][hapmap];0.80[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs7017899	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7463918	0.85[CHB][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7824183	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs7825635	1.00[YRI][hapmap]
rs7826270	0.82[ASW][hapmap];0.81[GIH][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]
rs7832171	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs7835735	0.87[CEU][hapmap];0.92[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap]
rs7836340	0.85[CEU][hapmap]
rs7844829	1.00[YRI][hapmap]
rs929686	0.81[GIH][hapmap]
rs9297476	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2755868	chr8:113282795-113634842	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2754232	chr8:113294967-113634842	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6986274	TRHR	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113410000-113412400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:113410600-113411000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:113410600-113411000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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