Variant report

Variant	rs7463918
Chromosome Location	chr8:113404601-113404602
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:113396804..113398846-chr8:113404177..113405971,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10092138	0.82[AMR][1000 genomes]
rs10101060	1.00[YRI][hapmap]
rs10107134	0.92[CEU][hapmap];0.85[CHB][hapmap];0.80[AMR][1000 genomes]
rs10110469	1.00[YRI][hapmap]
rs10111988	1.00[YRI][hapmap]
rs10216803	1.00[YRI][hapmap]
rs10505175	0.85[CHB][hapmap]
rs10505176	0.81[JPT][hapmap]
rs10955618	0.81[JPT][hapmap]
rs1158895	1.00[YRI][hapmap]
rs11778155	1.00[YRI][hapmap]
rs11778443	0.81[JPT][hapmap]
rs11778532	1.00[YRI][hapmap]
rs11782384	0.81[JPT][hapmap]
rs11783041	0.88[CEU][hapmap]
rs11785270	1.00[YRI][hapmap]
rs11785419	0.85[JPT][hapmap]
rs1319683	0.86[CHB][hapmap];0.80[AMR][1000 genomes]
rs13439841	0.80[AMR][1000 genomes]
rs1352995	1.00[YRI][hapmap]
rs1377368	1.00[YRI][hapmap]
rs1388962	0.86[CHB][hapmap]
rs1420857	1.00[YRI][hapmap]
rs1492675	0.80[AMR][1000 genomes]
rs1548986	0.81[JPT][hapmap]
rs16883359	1.00[YRI][hapmap]
rs16883401	0.81[JPT][hapmap];1.00[YRI][hapmap]
rs16883404	0.81[JPT][hapmap];1.00[YRI][hapmap]
rs16883432	1.00[YRI][hapmap]
rs16883437	1.00[YRI][hapmap]
rs16883454	0.81[JPT][hapmap];1.00[YRI][hapmap]
rs16883506	0.81[JPT][hapmap]
rs16883549	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16883689	1.00[YRI][hapmap]
rs1861755	1.00[YRI][hapmap]
rs1948411	0.81[JPT][hapmap]
rs1993207	1.00[YRI][hapmap]
rs1994795	0.81[JPT][hapmap]
rs2123489	0.85[CHB][hapmap]
rs2131297	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2201203	0.81[JPT][hapmap]
rs2353271	1.00[YRI][hapmap]
rs28661390	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28762986	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3922407	1.00[YRI][hapmap]
rs4363229	1.00[YRI][hapmap]
rs62514456	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6415459	1.00[YRI][hapmap]
rs6981814	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6986274	0.85[CHB][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7017899	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7824183	1.00[YRI][hapmap]
rs7825635	1.00[YRI][hapmap]
rs7826270	1.00[YRI][hapmap]
rs7836340	0.83[CEU][hapmap]
rs7844829	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2755868	chr8:113282795-113634842	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2754232	chr8:113294967-113634842	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113399400-113410600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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