Variant report

Variant	rs903684
Chromosome Location	chr1:227697099-227697100
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:227696113..227699015-chr1:227705081..227707461,4	K562	blood:
2	chr1:227695645..227697944-chr1:227752053..227753592,2	K562	blood:
3	chr1:227696655..227700997-chr1:227705079..227707461,4	K562	blood:

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10047205	0.81[JPT][hapmap]
rs1021553	0.96[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1021554	0.96[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10495276	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10799423	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10799431	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10799432	0.96[CEU][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes]
rs10799433	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10799434	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10799435	0.96[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10916158	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10916159	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10916165	0.96[CEU][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10916169	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10916175	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10916176	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10916178	0.82[JPT][hapmap]
rs10916179	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10916182	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10916183	0.96[CEU][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10916184	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10916185	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10916187	0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11484723	0.83[EUR][1000 genomes]
rs11580570	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12023298	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12025815	0.96[CEU][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12040302	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12070002	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12070036	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12079123	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12080321	0.96[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12080590	0.86[JPT][hapmap]
rs12082414	0.86[JPT][hapmap]
rs12096675	0.82[JPT][hapmap]
rs12132444	0.96[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12740317	0.83[EUR][1000 genomes]
rs1407718	0.96[CEU][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs1495842	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1495845	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1495847	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1495849	0.86[JPT][hapmap]
rs16847966	0.86[JPT][hapmap]
rs16847991	0.86[JPT][hapmap]
rs16847992	0.87[JPT][hapmap]
rs16848029	0.82[JPT][hapmap]
rs1845758	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2018401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2088210	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2088211	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2088212	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2088214	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2093609	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2093610	0.92[CEU][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2132366	0.87[JPT][hapmap]
rs2132367	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2201571	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2453682	0.91[JPT][hapmap]
rs2644140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2644161	0.91[JPT][hapmap]
rs2814064	0.81[CHB][hapmap]
rs28407112	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2935145	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2935146	0.96[CEU][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2935147	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2935152	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2935155	0.96[CEU][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2999741	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2999743	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2999744	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2999745	0.96[CEU][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2999746	0.96[CEU][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3010183	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3010186	0.96[CEU][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3010190	0.96[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3010191	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3010192	0.96[CEU][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3010193	0.96[CEU][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3010194	0.96[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3010195	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3010196	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3748806	0.81[JPT][hapmap]
rs4359006	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4376731	0.82[JPT][hapmap]
rs4653512	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4653514	0.96[CEU][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4653515	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4653848	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4653849	0.96[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4653850	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4653853	0.96[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6664682	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6671825	0.86[EUR][1000 genomes]
rs6683151	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs6697867	0.96[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7512348	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7523915	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7528094	0.96[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7539151	0.81[JPT][hapmap]
rs7539914	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7542685	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7551459	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs903683	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs903690	0.96[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs903694	0.87[JPT][hapmap]
rs903695	0.86[JPT][hapmap]
rs903697	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs951083	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs965942	0.86[JPT][hapmap]
rs976959	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534002	chr1:227315186-228047108	Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv2753828	chr1:227670265-227791265	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv945337	chr1:227680551-227712483	ZNF genes & repeats Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv873244	chr1:227682414-227736363	Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv873245	chr1:227683859-227697381	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv873246	chr1:227694948-227884465	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1007479	chr1:227695868-227984466	Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:227696600-227699600	Weak transcription	Right Atrium	heart

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