Variant report

Variant	rs910184
Chromosome Location	chr1:84325129-84325130
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs481354	0.87[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs512737	1.00[JPT][hapmap]
rs523531	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs532246	0.87[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs592905	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs593763	0.87[ASN][1000 genomes]
rs597594	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs602568	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs603447	0.85[ASN][1000 genomes]
rs618232	0.87[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs626376	1.00[JPT][hapmap]
rs649226	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs6576955	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs664508	0.87[ASN][1000 genomes]
rs6666984	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs671209	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs678794	0.87[CEU][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs680627	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs680905	0.87[CEU][hapmap];0.80[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap]
rs683074	0.87[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs726607	0.82[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7554866	0.96[ASN][1000 genomes]
rs810915	0.87[CEU][hapmap];1.00[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs910184	TTLL7	cis	multi-tissue	Pritchard
rs910184	LPHN2	cis	parietal	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84317000-84326000	Weak transcription	Pancreas	Pancrea
2	chr1:84317200-84325800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr1:84320400-84326400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:84323000-84325800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:84323200-84325400	Enhancers	Liver	Liver
6	chr1:84323400-84326000	Weak transcription	Fetal Kidney	kidney
7	chr1:84323400-84326200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr1:84323400-84327000	Weak transcription	Fetal Heart	heart
9	chr1:84324200-84326000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:84324200-84327000	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr1:84324400-84325400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:84324400-84325800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr1:84324600-84325400	Weak transcription	Primary T cells from cord blood	blood
14	chr1:84324600-84325600	Weak transcription	Brain Hippocampus Middle	brain
15	chr1:84324600-84325800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:84324600-84325800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr1:84324600-84326000	Weak transcription	Brain Angular Gyrus	brain
18	chr1:84324800-84325600	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr1:84324800-84325800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr1:84325000-84325800	Enhancers	Brain Anterior Caudate	brain

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