Variant report

Variant	rs512737
Chromosome Location	chr1:84435181-84435182
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1016379	0.81[CHB][hapmap]
rs12035258	0.82[CHB][hapmap];0.87[YRI][hapmap]
rs1811643	0.87[EUR][1000 genomes]
rs2139931	0.81[CHB][hapmap];0.82[YRI][hapmap]
rs2182199	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2642184	0.81[CHB][hapmap];0.82[YRI][hapmap]
rs2642185	0.81[CHB][hapmap];0.82[YRI][hapmap]
rs2684911	0.81[CHB][hapmap];0.82[YRI][hapmap]
rs2684914	0.81[CHB][hapmap]
rs2812451	0.89[CHB][hapmap];0.85[YRI][hapmap]
rs2892811	0.87[EUR][1000 genomes]
rs471151	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs481354	0.82[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs484505	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs522892	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs523531	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs532246	0.82[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs562971	0.87[EUR][1000 genomes]
rs566830	0.90[EUR][1000 genomes]
rs575577	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs592905	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs593763	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs593869	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs597594	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs602568	0.95[EUR][1000 genomes]
rs603447	0.99[EUR][1000 genomes]
rs615352	0.91[EUR][1000 genomes]
rs618232	0.82[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs625107	0.90[EUR][1000 genomes]
rs626376	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[EUR][1000 genomes]
rs629277	0.83[EUR][1000 genomes]
rs649226	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6576955	0.95[EUR][1000 genomes]
rs659227	0.91[EUR][1000 genomes]
rs659743	0.91[EUR][1000 genomes]
rs664508	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6666984	0.95[EUR][1000 genomes]
rs667304	1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs669110	0.91[EUR][1000 genomes]
rs671209	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs671561	0.87[EUR][1000 genomes]
rs678794	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs680627	1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs680905	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs683074	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs684114	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs684651	0.90[EUR][1000 genomes]
rs726607	0.94[EUR][1000 genomes]
rs810915	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871551	chr1:84354464-84453223	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84416800-84436400	Weak transcription	Psoas Muscle	Psoas
2	chr1:84420400-84435800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:84425200-84453200	Weak transcription	NHLF	lung
4	chr1:84426200-84452200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:84426800-84435800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr1:84427800-84436400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:84427800-84444600	Weak transcription	HSMM	muscle
8	chr1:84429000-84436400	Weak transcription	Pancreas	Pancrea
9	chr1:84429200-84445400	Weak transcription	Aorta	Aorta
10	chr1:84430200-84441600	Weak transcription	HSMMtube	muscle
11	chr1:84430400-84447400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:84431600-84437400	Enhancers	Brain Substantia Nigra	brain
13	chr1:84433400-84435800	Weak transcription	Brain Angular Gyrus	brain
14	chr1:84433600-84436400	Weak transcription	Right Atrium	heart
15	chr1:84433800-84435800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr1:84433800-84436000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr1:84433800-84446000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr1:84434000-84436200	Weak transcription	Brain Anterior Caudate	brain
19	chr1:84434000-84436200	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links