Variant report

Variant	rs566830
Chromosome Location	chr1:84504109-84504110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs12035258	0.88[YRI][hapmap]
rs1811643	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2182199	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2642184	0.85[YRI][hapmap]
rs2812447	0.80[CHB][hapmap]
rs2812451	0.83[CHB][hapmap];0.87[YRI][hapmap]
rs2892811	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs471151	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs481354	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs484505	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs512737	0.83[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.90[EUR][1000 genomes]
rs522892	0.89[EUR][1000 genomes]
rs523531	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs532246	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs562971	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs575577	0.87[EUR][1000 genomes]
rs592905	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs593763	0.90[EUR][1000 genomes]
rs593869	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs597594	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs602568	0.85[EUR][1000 genomes]
rs603447	0.89[EUR][1000 genomes]
rs615352	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs618232	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs625107	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs626376	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs629277	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs649226	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs6576955	0.85[EUR][1000 genomes]
rs659227	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs659743	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs663521	0.87[ASN][1000 genomes]
rs664508	0.89[EUR][1000 genomes]
rs6666984	0.85[EUR][1000 genomes]
rs667304	1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs669110	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs671209	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs671561	0.87[EUR][1000 genomes]
rs678794	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs680627	0.85[EUR][1000 genomes]
rs680905	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs683074	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs684114	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs684651	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs726607	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs810915	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1732	chr1:84499098-84544635	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv508360	chr1:84500230-84524997	Bivalent Enhancer Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84503400-84504400	Active TSS	HepG2	liver
2	chr1:84503800-84504400	Active TSS	Liver	Liver
3	chr1:84504000-84504400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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