Variant report

Variant	rs667304
Chromosome Location	chr1:84478221-84478222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84463231..84465274-chr1:84476480..84478327,2	K562	blood:
2	chr1:84460505..84462859-chr1:84477477..84479738,2	K562	blood:

Variant related genes	Relation type
ENSG00000137941	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1016379	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12035258	0.86[CHB][hapmap]
rs1811643	0.83[EUR][1000 genomes]
rs2139931	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2182199	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2642184	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2642185	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2684911	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2684914	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2812447	0.88[CHB][hapmap]
rs2812451	1.00[CHB][hapmap]
rs2892811	0.83[EUR][1000 genomes]
rs471151	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs481354	0.89[EUR][1000 genomes]
rs484505	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs512737	1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs522892	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs523531	1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs532246	0.89[EUR][1000 genomes]
rs562971	0.83[EUR][1000 genomes]
rs566830	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs575577	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs592905	1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs593763	0.89[EUR][1000 genomes]
rs593869	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs602568	0.85[EUR][1000 genomes]
rs603447	0.88[EUR][1000 genomes]
rs615352	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs618232	0.85[EUR][1000 genomes]
rs625107	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs626376	1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs629277	0.89[ASN][1000 genomes]
rs649226	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6576955	0.85[EUR][1000 genomes]
rs659227	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs659743	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs664508	0.88[EUR][1000 genomes]
rs6666984	0.85[EUR][1000 genomes]
rs669110	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs671209	1.00[CHB][hapmap]
rs671561	0.83[EUR][1000 genomes]
rs678794	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs680627	0.85[EUR][1000 genomes]
rs680905	1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs683074	0.88[EUR][1000 genomes]
rs684114	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs684651	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs726607	0.83[EUR][1000 genomes]
rs810915	1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84474000-84484000	Weak transcription	Esophagus	oesophagus
2	chr1:84477000-84478600	Enhancers	HMEC	breast
3	chr1:84477000-84479000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:84477200-84478600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:84477200-84478800	Enhancers	NHEK	skin
6	chr1:84477600-84478400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr1:84477600-84478800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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