Variant report

Variant	rs522892
Chromosome Location	chr1:84446980-84446981
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GNG5-4	chr1:84444801-84447252	ENSG00000233061.1

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1811643	0.86[EUR][1000 genomes]
rs2182199	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2892811	0.86[EUR][1000 genomes]
rs471151	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs481354	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs484505	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs512737	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs523531	0.86[EUR][1000 genomes]
rs532246	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs562971	0.86[EUR][1000 genomes]
rs566830	0.89[EUR][1000 genomes]
rs575577	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs592905	0.86[EUR][1000 genomes]
rs593763	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs593869	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs602568	0.96[EUR][1000 genomes]
rs603447	0.99[EUR][1000 genomes]
rs615352	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs618232	0.96[EUR][1000 genomes]
rs625107	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs626376	0.87[EUR][1000 genomes]
rs629277	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs649226	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6576955	0.96[EUR][1000 genomes]
rs659227	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs659743	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs664508	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6666984	0.96[EUR][1000 genomes]
rs667304	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs669110	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs671561	0.86[EUR][1000 genomes]
rs678794	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs680627	0.96[EUR][1000 genomes]
rs680905	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs683074	0.99[EUR][1000 genomes]
rs684114	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs684651	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs726607	0.94[EUR][1000 genomes]
rs810915	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871551	chr1:84354464-84453223	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84425200-84453200	Weak transcription	NHLF	lung
2	chr1:84426200-84452200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:84430400-84447400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:84436600-84452200	Weak transcription	Brain Angular Gyrus	brain
5	chr1:84437400-84449600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr1:84441800-84447000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr1:84445000-84450600	Weak transcription	Right Atrium	heart
8	chr1:84446200-84461800	Weak transcription	Aorta	Aorta

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