Variant report

Variant	rs649226
Chromosome Location	chr1:84451069-84451070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1811643	0.87[EUR][1000 genomes]
rs2182199	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2812447	0.80[CHB][hapmap]
rs2812451	0.83[CHB][hapmap]
rs2892811	0.87[EUR][1000 genomes]
rs471151	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs481354	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs484505	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs512737	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs522892	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs532246	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs562971	0.87[EUR][1000 genomes]
rs566830	0.90[EUR][1000 genomes]
rs575577	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs592905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs593763	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs593869	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs597594	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs602568	0.95[EUR][1000 genomes]
rs603447	0.99[EUR][1000 genomes]
rs615352	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs618232	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs625107	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs626376	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs629277	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6576955	0.95[EUR][1000 genomes]
rs659227	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs659743	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs664508	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6666984	0.95[EUR][1000 genomes]
rs667304	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs669110	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs671209	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs671561	0.87[EUR][1000 genomes]
rs678794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs680627	1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs680905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs683074	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs684114	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs684651	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs726607	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs810915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871551	chr1:84354464-84453223	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84425200-84453200	Weak transcription	NHLF	lung
2	chr1:84426200-84452200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:84436600-84452200	Weak transcription	Brain Angular Gyrus	brain
4	chr1:84446200-84461800	Weak transcription	Aorta	Aorta
5	chr1:84450800-84451200	Flanking Active TSS	Gastric	stomach
6	chr1:84450800-84451200	Enhancers	Pancreas	Pancrea
7	chr1:84450800-84451200	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr1:84451000-84451200	Enhancers	Stomach Mucosa	stomach

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