Variant report

Variant	rs593869
Chromosome Location	chr1:84487700-84487701
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr1:84487339-84488011	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000229486	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1811643	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2182199	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2892811	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs471151	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs481354	0.94[EUR][1000 genomes]
rs484505	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs512737	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs522892	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs523531	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs532246	0.94[EUR][1000 genomes]
rs562971	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs566830	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs575577	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs592905	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs593763	0.94[EUR][1000 genomes]
rs602568	0.89[EUR][1000 genomes]
rs603447	0.94[EUR][1000 genomes]
rs615352	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs618232	0.89[EUR][1000 genomes]
rs625107	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs626376	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs629277	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs649226	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6576955	0.89[EUR][1000 genomes]
rs659227	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs659743	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs664508	0.94[EUR][1000 genomes]
rs6666984	0.89[EUR][1000 genomes]
rs667304	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs669110	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs671561	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs678794	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs680627	0.89[EUR][1000 genomes]
rs680905	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs683074	0.94[EUR][1000 genomes]
rs684114	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs684651	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs726607	0.88[EUR][1000 genomes]
rs810915	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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