Variant report

No.	Distal block	Cell Line	Cell type
1	chr10:50586751..50588535-chr10:50592875..50594990,2	K562	blood:
2	chr10:50590808..50592740-chr10:50594264..50595933,2	K562	blood:
3	chr10:50521945..50524834-chr10:50593428..50595836,2	K562	blood:
4	chr10:50593475..50595915-chr10:50600873..50603743,2	K562	blood:
5	chr10:50593199..50596011-chr10:50596938..50598821,2	K562	blood:

Variant related genes	Relation type
ENSG00000165606	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10857460	0.88[CEU][hapmap]
rs10857480	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11101076	0.89[CEU][hapmap]
rs11101085	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11101086	0.88[EUR][1000 genomes]
rs11101115	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12220898	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12254955	0.89[CEU][hapmap]
rs2292201	0.89[CEU][hapmap]
rs2889782	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4478905	0.89[CEU][hapmap]
rs4483512	0.89[CEU][hapmap]
rs4838377	0.85[CEU][hapmap]
rs55892993	0.88[EUR][1000 genomes]
rs56114955	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56165245	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56190599	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56203859	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61519033	0.88[EUR][1000 genomes]
rs6537519	0.88[CEU][hapmap]
rs7074999	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7082585	0.89[CEU][hapmap]
rs7915976	0.80[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895377	chr10:50588990-50678212	ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50591600-50594800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:50593600-50596200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:50594000-50594400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:50594200-50594600	Enhancers	Esophagus	oesophagus

Quick Search: