Variant report

Variant	rs56203859
Chromosome Location	chr10:50553146-50553147
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10732630	0.83[EUR][1000 genomes]
rs10732631	0.83[EUR][1000 genomes]
rs10735221	0.83[EUR][1000 genomes]
rs10745257	0.80[EUR][1000 genomes]
rs10776550	0.80[EUR][1000 genomes]
rs10776553	0.83[EUR][1000 genomes]
rs10857455	0.80[EUR][1000 genomes]
rs10857456	0.80[EUR][1000 genomes]
rs10857458	0.83[EUR][1000 genomes]
rs10857460	0.85[EUR][1000 genomes]
rs10857477	1.00[ASN][1000 genomes]
rs10857480	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11101075	0.83[EUR][1000 genomes]
rs11101076	0.83[EUR][1000 genomes]
rs11101085	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11101086	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12220898	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12254955	0.83[EUR][1000 genomes]
rs17009669	0.81[EUR][1000 genomes]
rs17009755	0.84[EUR][1000 genomes]
rs17009880	0.84[EUR][1000 genomes]
rs17009886	0.86[EUR][1000 genomes]
rs2377975	0.83[EUR][1000 genomes]
rs2377977	0.83[EUR][1000 genomes]
rs2377978	0.83[EUR][1000 genomes]
rs2889782	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3996894	0.83[EUR][1000 genomes]
rs3996895	0.83[EUR][1000 genomes]
rs4297382	0.81[EUR][1000 genomes]
rs4310533	0.83[EUR][1000 genomes]
rs4483512	0.83[EUR][1000 genomes]
rs4582889	0.80[EUR][1000 genomes]
rs4600130	0.81[EUR][1000 genomes]
rs4838377	0.83[EUR][1000 genomes]
rs4838479	0.83[EUR][1000 genomes]
rs4838480	0.83[EUR][1000 genomes]
rs4838481	0.83[EUR][1000 genomes]
rs4838482	0.83[EUR][1000 genomes]
rs4838483	0.83[EUR][1000 genomes]
rs4838485	0.83[EUR][1000 genomes]
rs4838486	0.83[EUR][1000 genomes]
rs4838501	1.00[ASN][1000 genomes]
rs55892993	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56114955	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56165245	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56190599	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56387457	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61519033	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6537519	0.81[EUR][1000 genomes]
rs6537520	0.83[EUR][1000 genomes]
rs7068959	0.80[EUR][1000 genomes]
rs7074999	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7082585	0.83[EUR][1000 genomes]
rs7085410	0.81[EUR][1000 genomes]
rs7098191	0.83[EUR][1000 genomes]
rs73308728	0.81[EUR][1000 genomes]
rs73308730	0.80[EUR][1000 genomes]
rs73308731	0.81[EUR][1000 genomes]
rs7905866	0.83[EUR][1000 genomes]
rs7911371	0.83[EUR][1000 genomes]
rs7911514	0.83[EUR][1000 genomes]
rs7913006	0.83[EUR][1000 genomes]
rs7913851	0.83[EUR][1000 genomes]
rs912467	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50553000-50560200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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