Variant report

Variant	rs17009880
Chromosome Location	chr10:50486160-50486161
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50484423..50486164-chr10:50488112..50489860,2	K562	blood:
2	chr10:50465169..50466715-chr10:50486145..50487685,2	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10732630	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10732631	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10735220	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10735221	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10745257	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10776550	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10776551	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10776553	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10776555	0.90[EUR][1000 genomes]
rs10857454	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10857455	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10857456	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10857458	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10857460	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10857480	0.80[CEU][hapmap]
rs11101075	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101076	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11101085	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs11101086	0.84[EUR][1000 genomes]
rs1122560	0.80[ASN][1000 genomes]
rs12220898	0.80[CEU][hapmap]
rs12254955	1.00[CEU][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009669	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17009755	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009886	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2377975	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377976	1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2377977	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2377978	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2377979	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2889806	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3996894	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3996895	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4297382	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4310533	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4478905	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4483512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4582889	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4600130	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838376	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838377	1.00[CEU][hapmap];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4838479	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4838480	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4838481	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4838482	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4838483	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838485	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838486	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55892993	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56165245	0.84[EUR][1000 genomes]
rs56203859	0.84[EUR][1000 genomes]
rs56387457	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61519033	0.84[EUR][1000 genomes]
rs6537519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537520	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7068959	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7074999	0.80[CEU][hapmap]
rs7082585	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7085410	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7098191	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73308728	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73308730	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73308731	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7905866	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911371	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911514	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913006	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913851	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912467	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50481400-50486800	Weak transcription	Osteobl	bone
2	chr10:50481600-50486800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:50481800-50486600	Weak transcription	HSMM	muscle
4	chr10:50481800-50486800	Weak transcription	NHDF-Ad	bronchial
5	chr10:50482000-50486200	Weak transcription	HSMMtube	muscle
6	chr10:50482200-50487400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:50482400-50487600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:50484200-50486800	Enhancers	Fetal Heart	heart
9	chr10:50485200-50488400	Enhancers	Left Ventricle	heart
10	chr10:50485600-50487400	Enhancers	K562	blood
11	chr10:50485600-50488400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:50485600-50488400	Enhancers	Fetal Muscle Leg	muscle
13	chr10:50485600-50488400	Enhancers	Right Ventricle	heart
14	chr10:50485800-50488200	Enhancers	Psoas Muscle	Psoas
15	chr10:50485800-50488200	Enhancers	Right Atrium	heart
16	chr10:50485800-50489200	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr10:50485800-50495000	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr10:50486000-50486200	Bivalent Enhancer	Placenta	Placenta
19	chr10:50486000-50486400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:50486000-50486400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr10:50486000-50487000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr10:50486000-50490400	Enhancers	Monocytes-CD14+_RO01746	blood

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