Variant report

Variant	rs61519033
Chromosome Location	chr10:50528029-50528030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50516625..50523164-chr10:50524827..50529904,7	K562	blood:
2	chr10:50522197..50524972-chr10:50527699..50530228,2	K562	blood:
3	chr10:50517433..50519865-chr10:50527374..50529904,2	K562	blood:
4	chr10:50527598..50529126-chr10:50532227..50534014,2	K562	blood:
5	chr10:50506490..50508857-chr10:50525681..50528479,3	K562	blood:

Variant related genes	Relation type
ENSG00000236208	Chromatin interaction
ENSG00000177354	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10732630	0.83[EUR][1000 genomes]
rs10732631	0.83[EUR][1000 genomes]
rs10735221	0.83[EUR][1000 genomes]
rs10745257	0.80[EUR][1000 genomes]
rs10776550	0.80[EUR][1000 genomes]
rs10776553	0.83[EUR][1000 genomes]
rs10857455	0.80[EUR][1000 genomes]
rs10857456	0.80[EUR][1000 genomes]
rs10857458	0.83[EUR][1000 genomes]
rs10857460	0.85[EUR][1000 genomes]
rs10857477	0.85[ASN][1000 genomes]
rs10857480	0.87[EUR][1000 genomes]
rs11101075	0.83[EUR][1000 genomes]
rs11101076	0.83[EUR][1000 genomes]
rs11101085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11101086	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12220898	0.89[EUR][1000 genomes]
rs12254955	0.83[EUR][1000 genomes]
rs17009669	0.81[EUR][1000 genomes]
rs17009755	0.84[EUR][1000 genomes]
rs17009880	0.84[EUR][1000 genomes]
rs17009886	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2292201	0.85[ASN][1000 genomes]
rs2377975	0.83[EUR][1000 genomes]
rs2377977	0.83[EUR][1000 genomes]
rs2377978	0.83[EUR][1000 genomes]
rs2889782	0.90[EUR][1000 genomes]
rs3996894	0.83[EUR][1000 genomes]
rs3996895	0.83[EUR][1000 genomes]
rs4297382	0.81[EUR][1000 genomes]
rs4310533	0.83[EUR][1000 genomes]
rs4483512	0.83[EUR][1000 genomes]
rs4582889	0.80[EUR][1000 genomes]
rs4600130	0.81[EUR][1000 genomes]
rs4838377	0.83[EUR][1000 genomes]
rs4838479	0.83[EUR][1000 genomes]
rs4838480	0.83[EUR][1000 genomes]
rs4838481	0.83[EUR][1000 genomes]
rs4838482	0.83[EUR][1000 genomes]
rs4838483	0.83[EUR][1000 genomes]
rs4838485	0.83[EUR][1000 genomes]
rs4838486	0.83[EUR][1000 genomes]
rs4838501	0.85[ASN][1000 genomes]
rs55892993	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56114955	0.87[EUR][1000 genomes]
rs56165245	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56190599	0.89[EUR][1000 genomes]
rs56203859	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56387457	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6537519	0.81[EUR][1000 genomes]
rs6537520	0.83[EUR][1000 genomes]
rs7068959	0.80[EUR][1000 genomes]
rs7074999	0.88[EUR][1000 genomes]
rs7082585	0.83[EUR][1000 genomes]
rs7085410	0.81[EUR][1000 genomes]
rs7098191	0.83[EUR][1000 genomes]
rs73308728	0.81[EUR][1000 genomes]
rs73308730	0.80[EUR][1000 genomes]
rs73308731	0.81[EUR][1000 genomes]
rs7905866	0.83[EUR][1000 genomes]
rs7911371	0.83[EUR][1000 genomes]
rs7911514	0.83[EUR][1000 genomes]
rs7913006	0.83[EUR][1000 genomes]
rs7913851	0.83[EUR][1000 genomes]
rs912467	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50517200-50530600	Weak transcription	Pancreas	Pancrea
2	chr10:50522000-50528200	Weak transcription	Right Atrium	heart
3	chr10:50523200-50528400	Weak transcription	Psoas Muscle	Psoas
4	chr10:50524600-50528600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
5	chr10:50525200-50529000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr10:50525800-50529000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr10:50526400-50528400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr10:50526800-50528200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:50527000-50528200	Weak transcription	Primary B cells from cord blood	blood
10	chr10:50527000-50528200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:50527000-50530400	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:50527000-50530600	Weak transcription	Fetal Heart	heart
13	chr10:50527200-50528200	Strong transcription	Skeletal Muscle Male	skeletal muscle
14	chr10:50527400-50528200	Weak transcription	Left Ventricle	heart
15	chr10:50527400-50530600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr10:50527400-50530600	Weak transcription	Right Ventricle	heart
17	chr10:50527400-50535800	Weak transcription	K562	blood

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