Variant report

Variant	rs73308731
Chromosome Location	chr10:50463336-50463337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50461288..50465074-chr10:50465528..50469172,3	K562	blood:
2	chr10:50462897..50464824-chr10:50509332..50512254,2	K562	blood:
3	chr10:50462244..50464154-chr10:50465883..50467890,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10732630	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10732631	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10735220	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10735221	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10745257	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10776550	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10776551	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10776553	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10776555	0.88[EUR][1000 genomes]
rs10857454	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857455	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857456	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857458	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857460	0.93[EUR][1000 genomes]
rs11101075	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11101076	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11101085	0.84[EUR][1000 genomes]
rs11101086	0.81[EUR][1000 genomes]
rs12254955	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17009669	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009755	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17009880	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17009886	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2377975	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2377976	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2377977	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377978	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377979	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2889806	0.96[ASN][1000 genomes]
rs3996894	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3996895	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4297382	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4310533	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4478905	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4483512	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4582889	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4600130	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4838376	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4838377	0.96[EUR][1000 genomes]
rs4838479	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838480	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838481	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838482	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838483	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4838485	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4838486	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55892993	0.81[EUR][1000 genomes]
rs56165245	0.81[EUR][1000 genomes]
rs56203859	0.81[EUR][1000 genomes]
rs56387457	0.88[EUR][1000 genomes]
rs61519033	0.81[EUR][1000 genomes]
rs6537519	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6537520	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7068959	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082585	0.96[EUR][1000 genomes]
rs7085410	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7098191	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73308728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73308730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905866	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7911371	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7911514	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7913006	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7913851	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	esv3398622	chr10:50460546-50464244	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50460800-50467000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:50461200-50463800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr10:50461200-50464000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr10:50461400-50463800	Enhancers	Thymus	Thymus
5	chr10:50461400-50464200	Enhancers	Fetal Thymus	thymus
6	chr10:50461400-50466000	Enhancers	Primary B cells from peripheral blood	blood
7	chr10:50461600-50464000	Weak transcription	Psoas Muscle	Psoas
8	chr10:50462000-50463400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:50462000-50463400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:50462000-50463400	Enhancers	Spleen	Spleen
11	chr10:50462000-50463600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr10:50462000-50463600	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr10:50462200-50463400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr10:50462200-50463400	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr10:50462200-50463400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr10:50462200-50463800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr10:50462200-50464800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
18	chr10:50462400-50463400	Enhancers	Fetal Muscle Trunk	muscle
19	chr10:50462400-50463600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
20	chr10:50462600-50463400	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr10:50462600-50463400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr10:50462600-50464200	Enhancers	Fetal Muscle Leg	muscle
23	chr10:50462800-50463600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:50463000-50464200	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr10:50463000-50478800	Weak transcription	Right Atrium	heart
26	chr10:50463200-50463600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr10:50463200-50463800	Enhancers	Dnd41	blood
28	chr10:50463200-50464000	Enhancers	Primary T cells from cord blood	blood
29	chr10:50463200-50465200	Enhancers	Primary B cells from cord blood	blood
30	chr10:50463200-50466000	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr10:50463200-50466200	Enhancers	Primary hematopoietic stem cells	blood
32	chr10:50463200-50466400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:50463200-50470400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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