Variant report

Variant	rs917206
Chromosome Location	chr7:27385004-27385005
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11563996	0.89[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978680	1.00[AMR][1000 genomes]
rs17428890	0.89[YRI][hapmap]
rs17472728	1.00[AMR][1000 genomes]
rs17501559	1.00[AMR][1000 genomes]
rs17502719	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17502895	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17502922	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1990123	1.00[YRI][hapmap]
rs28398485	1.00[AMR][1000 genomes]
rs4413681	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4719887	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27379800-27388800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:27383800-27386200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:27384000-27385200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:27384000-27385400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr7:27384000-27386400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:27384400-27387200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr7:27384600-27385600	Weak transcription	Fetal Lung	lung
8	chr7:27384800-27385200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr7:27384800-27385200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr7:27384800-27386000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:27384800-27386200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr7:27384800-27386200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:27384800-27386200	Weak transcription	Fetal Stomach	stomach
14	chr7:27384800-27386200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr7:27384800-27386400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:27385000-27385800	Flanking Active TSS	A549	lung
17	chr7:27385000-27386200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:27385000-27386200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr7:27385000-27386400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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