Variant report

Variant	rs917920
Chromosome Location	chr7:19559428-19559429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10257637	0.84[ASN][1000 genomes]
rs17141640	0.84[ASN][1000 genomes]
rs2192480	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4612239	0.84[ASN][1000 genomes]
rs56322714	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62446654	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62448082	0.92[EUR][1000 genomes]
rs62448088	0.87[ASN][1000 genomes]
rs62448111	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62448112	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62448113	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62448114	0.84[ASN][1000 genomes]
rs62448115	0.84[ASN][1000 genomes]
rs62448116	0.84[ASN][1000 genomes]
rs62448117	0.84[ASN][1000 genomes]
rs62448118	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887819	chr7:19262091-19658389	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
3	esv2752996	chr7:19392086-19684019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2757219	chr7:19396146-19574066	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2759517	chr7:19396146-19620962	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv34500	chr7:19415543-19573763	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2758107	chr7:19436043-19620962	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv887823	chr7:19482261-19566286	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2752153	chr7:19509002-19620651	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv887824	chr7:19524863-19687779	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv887825	chr7:19536977-19615992	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19558800-19559600	Enhancers	HMEC	breast
2	chr7:19558800-19560600	Enhancers	Fetal Heart	heart
3	chr7:19558800-19560800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr7:19559000-19559600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:19559000-19560600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr7:19559200-19559600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:19559200-19559600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:19559200-19559600	Enhancers	Fetal Muscle Leg	muscle
9	chr7:19559200-19559600	Enhancers	Psoas Muscle	Psoas
10	chr7:19559200-19559600	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr7:19559200-19559800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:19559200-19559800	Enhancers	Fetal Stomach	stomach
13	chr7:19559200-19559800	Enhancers	HSMMtube	muscle
14	chr7:19559200-19560000	Enhancers	Osteobl	bone
15	chr7:19559200-19560200	Enhancers	NH-A	brain
16	chr7:19559200-19560400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:19559200-19560400	Enhancers	HSMM	muscle
18	chr7:19559400-19560000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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