Variant report

Variant	rs9258004
Chromosome Location	chr6:29655922-29655923
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs2071652	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3025657	0.85[ASN][1000 genomes]
rs3025669	0.85[ASN][1000 genomes]
rs3095285	0.82[ASN][1000 genomes]
rs3129029	0.82[ASN][1000 genomes]
rs3129043	0.82[ASN][1000 genomes]
rs362531	0.88[ASN][1000 genomes]
rs362532	0.88[ASN][1000 genomes]
rs3888780	0.82[ASN][1000 genomes]
rs58008302	0.85[ASN][1000 genomes]
rs60219685	0.85[ASN][1000 genomes]
rs6905408	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6908631	0.85[ASN][1000 genomes]
rs6920668	0.85[ASN][1000 genomes]
rs6931702	0.85[ASN][1000 genomes]
rs6933331	0.85[ASN][1000 genomes]
rs73402748	0.85[ASN][1000 genomes]
rs73402770	0.85[ASN][1000 genomes]
rs73402788	0.88[ASN][1000 genomes]
rs7739905	0.85[ASN][1000 genomes]
rs9257940	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9257953	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9257985	0.86[AFR][1000 genomes]
rs9257986	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9258033	0.95[EUR][1000 genomes]
rs9258130	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9258132	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9258159	0.81[ASN][1000 genomes]
rs9258191	0.81[ASN][1000 genomes]
rs9258201	0.82[ASN][1000 genomes]
rs9258206	0.84[ASN][1000 genomes]
rs9258209	0.84[ASN][1000 genomes]
rs9258249	0.81[ASN][1000 genomes]
rs9258266	0.82[ASN][1000 genomes]
rs9258271	0.81[ASN][1000 genomes]
rs9258273	0.82[ASN][1000 genomes]
rs9258276	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv883530	chr6:29645038-29677641	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv20940	chr6:29653954-29923410	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29625000-29663600	Weak transcription	Right Atrium	heart
2	chr6:29648800-29662600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:29652200-29656000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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