Variant report

Variant	rs58008302
Chromosome Location	chr6:29493261-29493262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:29492851-29493397	H1-hESC	embryonic stem cell:	n/a	chr6:29493216-29493227
2	CEBPB	chr6:29492820-29493375	K562	blood:	n/a	chr6:29493216-29493227
3	CEBPB	chr6:29493083-29493346	A549	lung:	n/a	chr6:29493216-29493227
4	CEBPB	chr6:29493070-29493392	IMR90	lung:	n/a	chr6:29493216-29493227
5	CEBPB	chr6:29493070-29493404	HepG2	liver:	n/a	chr6:29493216-29493227

Variant related genes	Relation type
LINC01015	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10484547	0.84[ASN][1000 genomes]
rs11970406	0.82[ASN][1000 genomes]
rs16894964	0.92[ASN][1000 genomes]
rs16894967	0.84[ASN][1000 genomes]
rs16894969	0.84[ASN][1000 genomes]
rs17184114	0.97[ASN][1000 genomes]
rs2066951	0.84[ASN][1000 genomes]
rs2107189	0.83[ASN][1000 genomes]
rs3025657	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3025669	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs362531	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs362532	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57396831	0.87[ASN][1000 genomes]
rs58211986	0.84[ASN][1000 genomes]
rs60219685	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs64036	0.82[ASN][1000 genomes]
rs6456964	0.85[ASN][1000 genomes]
rs6908631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925408	0.84[ASN][1000 genomes]
rs6925744	0.94[ASN][1000 genomes]
rs6925869	0.87[ASN][1000 genomes]
rs6931702	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72500877	0.94[ASN][1000 genomes]
rs73402748	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73402770	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73402788	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7739905	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739937	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9258004	0.85[ASN][1000 genomes]
rs9461536	0.82[ASN][1000 genomes]
rs9501677	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv883528	chr6:29447724-29494897	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv883529	chr6:29464365-29494897	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv966616	chr6:29479346-29495253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29468600-29496200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:29492400-29493600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:29492400-29493600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:29492400-29493600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:29492400-29493800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr6:29492800-29493600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:29492800-29493800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:29493000-29494600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:29493000-29494600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:29493000-29496400	Weak transcription	Pancreas	Pancrea
11	chr6:29493200-29493600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr6:29493200-29493600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr6:29493200-29496000	Weak transcription	Liver	Liver

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