Variant report

Variant	rs73402788
Chromosome Location	chr6:29514883-29514884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10484547	0.81[ASN][1000 genomes]
rs11970406	0.85[ASN][1000 genomes]
rs11970429	0.82[ASN][1000 genomes]
rs11970475	0.82[ASN][1000 genomes]
rs16894964	0.89[ASN][1000 genomes]
rs16894967	0.81[ASN][1000 genomes]
rs16894969	0.81[ASN][1000 genomes]
rs16895067	0.82[ASN][1000 genomes]
rs16895070	0.80[ASN][1000 genomes]
rs17184114	0.94[ASN][1000 genomes]
rs17184255	0.82[ASN][1000 genomes]
rs2066951	0.81[ASN][1000 genomes]
rs2076484	0.82[ASN][1000 genomes]
rs2076486	0.82[ASN][1000 genomes]
rs2076487	0.82[ASN][1000 genomes]
rs2107189	0.80[ASN][1000 genomes]
rs2272991	0.82[ASN][1000 genomes]
rs2294744	0.82[ASN][1000 genomes]
rs3025657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3025669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs362531	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs362532	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57396831	0.84[ASN][1000 genomes]
rs58008302	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58211986	0.81[ASN][1000 genomes]
rs59731351	0.82[ASN][1000 genomes]
rs59802757	0.82[ASN][1000 genomes]
rs60219685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs64036	0.85[ASN][1000 genomes]
rs6456964	0.82[ASN][1000 genomes]
rs6908631	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6915177	0.82[ASN][1000 genomes]
rs6920668	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6925408	0.81[ASN][1000 genomes]
rs6925744	0.91[ASN][1000 genomes]
rs6925869	0.84[ASN][1000 genomes]
rs6931702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6933331	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72500877	0.91[ASN][1000 genomes]
rs73402748	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73402770	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7739905	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7739937	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7757931	0.82[ASN][1000 genomes]
rs9258004	0.88[ASN][1000 genomes]
rs9258130	0.91[ASN][1000 genomes]
rs9258132	0.91[ASN][1000 genomes]
rs9461536	0.85[ASN][1000 genomes]
rs9461538	0.82[ASN][1000 genomes]
rs9501677	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29497000-29515000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:29514800-29515400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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