Variant report

Variant	rs57396831
Chromosome Location	chr6:29455811-29455812
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:29455700-29455850	HepG2	liver:	n/a	chr6:29455730-29455738 chr6:29455720-29455741
2	MAFK	chr6:29455447-29455818	K562	blood:	n/a	chr6:29455650-29455665 chr6:29455615-29455630
3	RAD21	chr6:29455526-29455821	H1-hESC	embryonic stem cell:	n/a	chr6:29455731-29455743 chr6:29455733-29455740
4	CTCF	chr6:29455554-29455834	K562	blood:	n/a	chr6:29455730-29455738 chr6:29455720-29455741

Variant related genes	Relation type
MAS1L	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10484547	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16894919	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs16894964	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16894967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16894969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17184114	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2066951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2073148	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2107189	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3025657	0.87[ASN][1000 genomes]
rs3025669	0.87[ASN][1000 genomes]
rs58008302	0.87[ASN][1000 genomes]
rs58211986	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60219685	0.87[ASN][1000 genomes]
rs6456951	0.84[AFR][1000 genomes]
rs6908631	0.87[ASN][1000 genomes]
rs6913746	0.83[ASN][1000 genomes]
rs6920668	0.87[ASN][1000 genomes]
rs6925408	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6925744	0.87[ASN][1000 genomes]
rs6925869	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6931702	0.87[ASN][1000 genomes]
rs6933331	0.87[ASN][1000 genomes]
rs72500877	0.87[ASN][1000 genomes]
rs73400915	0.84[AFR][1000 genomes]
rs73402748	0.87[ASN][1000 genomes]
rs73402770	0.87[ASN][1000 genomes]
rs73402788	0.84[ASN][1000 genomes]
rs7738548	0.84[AFR][1000 genomes]
rs7739905	0.87[ASN][1000 genomes]
rs7739937	0.94[ASN][1000 genomes]
rs7746356	0.86[AFR][1000 genomes]
rs9468551	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv883528	chr6:29447724-29494897	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29452200-29457000	Weak transcription	Liver	Liver
2	chr6:29454400-29456000	Enhancers	K562	blood
3	chr6:29454800-29457800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:29455000-29457200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:29455400-29457200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:29455600-29457200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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