Variant report

Variant	rs6913746
Chromosome Location	chr6:29495815-29495816
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:29495773-29495823	PrEC	prostate:	n/a
2	chr6:29495773-29495823	HMEC	breast:	n/a
3	chr6:29495773-29495823	Hepatocyte	liver:	n/a
4	chr6:29495773-29495823	AG04450	lung:	fetal
5	chr6:29495773-29495823	AG10803	skin:	n/a
6	chr6:29495773-29495823	SK-N-SH	brain:	n/a
7	chr6:29495773-29495823	HNPCEpiC	eye:	n/a
8	chr6:29495773-29495823	HCM	heart:	n/a
9	chr6:29495773-29495823	BJ	skin:	n/a
10	chr6:29495773-29495823	AG09319	gingival:	n/a
11	chr6:29495773-29495823	GM12892	blood:	n/a
12	chr6:29495773-29495823	GM12891	blood:	n/a
13	chr6:29495773-29495823	GM12878	blood:	n/a
14	chr6:29495773-29495823	ovcar-3	ovarian:	n/a
15	chr6:29495773-29495823	NHBE	bronchial:	n/a
16	chr6:29495773-29495823	Caco-2	colon:	n/a
17	chr6:29495773-29495823	HepG2	liver:	n/a
18	chr6:29495773-29495823	K562	blood:	n/a
19	chr6:29495773-29495823	HEK293	kidney:	embryo
20	chr6:29495773-29495823	NH-A	brain:	n/a
21	chr6:29495773-29495823	HPAEpiC	pulmonary alveolar:	n/a
22	chr6:29495773-29495823	AoSMC	blood vessel:	n/a
23	chr6:29495773-29495823	HCF	heart:	n/a
24	chr6:29495773-29495823	MCF-7	breast:	n/a
25	chr6:29495773-29495823	U87	brain:	n/a
26	chr6:29495773-29495823	NB4	blood:	n/a
27	chr6:29495773-29495823	HUVEC	blood vessel:	n/a
28	chr6:29495773-29495823	H1-hESC	embryonic stem cell:	embryo
29	chr6:29495773-29495823	HL-60	blood:	n/a
30	chr6:29495773-29495823	PANC-1	pancreas:	n/a
31	chr6:29495773-29495823	NT2-D1	testis:	n/a
32	chr6:29495773-29495823	AG09309	skin:	n/a
33	chr6:29495773-29495823	RPTEC	kidney:	n/a
34	chr6:29495773-29495823	HIPEpiC	eye:	n/a
35	chr6:29495773-29495823	ProgFib	skin:	n/a
36	chr6:29495773-29495823	PFSK-1	brain:	n/a
37	chr6:29495773-29495823	GM19239	blood:	n/a
38	chr6:29495773-29495823	LNCaP	prostate:	n/a
39	chr6:29495773-29495823	NHDF-neo	bronchial:	n/a
40	chr6:29495773-29495823	HEEpiC	esophagus:	n/a
41	chr6:29495773-29495823	MCF10A-Er-Src	breast:	n/a
42	chr6:29495773-29495823	CMK	blood:	n/a
43	chr6:29495773-29495823	IMR90	lung:	fetal
44	chr6:29495773-29495823	A549	lung:	n/a
45	chr6:29495773-29495823	Jurkat	blood:	n/a
46	chr6:29495773-29495823	AG04449	skin:	fetal
47	chr6:29495773-29495823	Hela-S3	cervix:	n/a
48	chr6:29495773-29495823	SAEC	small airway:	n/a
49	chr6:29495773-29495823	ECC-1	luminal epithelium:	n/a
50	chr6:29495773-29495823	GM06990	blood:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29494254..29496248-chr6:29505741..29508107,2	K562	blood:
2	chr6:29490586..29492205-chr6:29493882..29496471,2	K562	blood:

No data

Variant related genes	Relation type
LINC01015	CpG island
ENSG00000229281	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10484547	0.81[ASN][1000 genomes]
rs11970406	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11970429	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11970475	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16894967	0.81[ASN][1000 genomes]
rs16894969	0.81[ASN][1000 genomes]
rs16895067	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16895070	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17184255	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2066951	0.81[ASN][1000 genomes]
rs2076484	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2076486	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2076487	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2272991	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2294744	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2294746	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57241384	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57396831	0.83[ASN][1000 genomes]
rs58211986	0.81[ASN][1000 genomes]
rs59731351	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59802757	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs64036	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6456964	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6915177	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6925408	0.81[ASN][1000 genomes]
rs7739937	0.88[ASN][1000 genomes]
rs7757931	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9461536	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9461538	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9468551	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9501677	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29468600-29496200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:29493000-29496400	Weak transcription	Pancreas	Pancrea
3	chr6:29493200-29496000	Weak transcription	Liver	Liver

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