Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29498758..29502303-chr6:29502366..29506492,4	K562	blood:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10484547	0.92[ASN][1000 genomes]
rs16894919	0.86[ASN][1000 genomes]
rs16894964	0.81[ASN][1000 genomes]
rs16894967	0.92[ASN][1000 genomes]
rs16894969	0.92[ASN][1000 genomes]
rs17184114	0.85[ASN][1000 genomes]
rs2066951	0.92[ASN][1000 genomes]
rs2073148	0.86[ASN][1000 genomes]
rs2107189	0.90[ASN][1000 genomes]
rs3025657	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3025669	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs362531	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs362532	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57396831	0.94[ASN][1000 genomes]
rs58008302	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58211986	0.92[ASN][1000 genomes]
rs60219685	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6908631	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6913746	0.88[ASN][1000 genomes]
rs6920668	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6925408	0.92[ASN][1000 genomes]
rs6925744	0.82[ASN][1000 genomes]
rs6925869	0.89[ASN][1000 genomes]
rs6931702	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6933331	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72500877	0.82[ASN][1000 genomes]
rs73402748	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73402770	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73402788	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7739905	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9468551	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7739937	HLA-F	cis	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29497000-29515000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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