Variant report

Variant	rs9468551
Chromosome Location	chr6:29500927-29500928
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29498758..29502303-chr6:29502366..29506492,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OR2H2-2	chr6:29498829-29501345	ENSG00000224582.1
2	lnc-OR2H2-2	chr6:29498829-29501345	NONHSAT108525
3	lnc-OR2H2-2	chr6:29498829-29501345	NONHSAT108526
4	lnc-OR2H2-2	chr6:29499857-29501345	NONHSAT108527

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10484547	0.83[ASN][1000 genomes]
rs11970406	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11970429	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11970475	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16894967	0.83[ASN][1000 genomes]
rs16894969	0.83[ASN][1000 genomes]
rs16895067	0.83[ASN][1000 genomes]
rs16895070	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17184255	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2066951	0.83[ASN][1000 genomes]
rs2076484	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2076486	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2076487	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2107189	0.82[ASN][1000 genomes]
rs2272991	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2294744	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2294746	0.94[EUR][1000 genomes]
rs57241384	0.94[EUR][1000 genomes]
rs57396831	0.86[ASN][1000 genomes]
rs58211986	0.83[ASN][1000 genomes]
rs59731351	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59802757	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs64036	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6456964	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6913746	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6915177	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6925408	0.83[ASN][1000 genomes]
rs6925869	0.81[ASN][1000 genomes]
rs73402729	0.82[EUR][1000 genomes]
rs73402733	0.82[EUR][1000 genomes]
rs7739937	0.86[ASN][1000 genomes]
rs7757931	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9461536	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9461538	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9501677	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv10807	chr6:29498328-29501339	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29497000-29515000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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