Variant report

Variant	rs73402733
Chromosome Location	chr6:29492068-29492069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29490586..29492205-chr6:29493882..29496471,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11970406	0.87[EUR][1000 genomes]
rs11970429	0.87[EUR][1000 genomes]
rs11970475	0.87[EUR][1000 genomes]
rs16895070	0.87[EUR][1000 genomes]
rs17184255	0.87[EUR][1000 genomes]
rs2076484	0.87[EUR][1000 genomes]
rs2076486	0.87[EUR][1000 genomes]
rs2076487	0.87[EUR][1000 genomes]
rs2272991	0.87[EUR][1000 genomes]
rs2294744	0.87[EUR][1000 genomes]
rs2294746	0.87[EUR][1000 genomes]
rs57241384	0.87[EUR][1000 genomes]
rs59731351	0.87[EUR][1000 genomes]
rs59802757	0.87[EUR][1000 genomes]
rs64036	0.87[EUR][1000 genomes]
rs6456964	0.87[EUR][1000 genomes]
rs6915177	0.87[EUR][1000 genomes]
rs73402729	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73402731	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757931	0.87[EUR][1000 genomes]
rs9461536	0.87[EUR][1000 genomes]
rs9461538	0.87[EUR][1000 genomes]
rs9468551	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv883528	chr6:29447724-29494897	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv883529	chr6:29464365-29494897	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv966616	chr6:29479346-29495253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29468600-29496200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:29491400-29493200	Enhancers	Liver	Liver
3	chr6:29491800-29492200	Weak transcription	Pancreas	Pancrea
4	chr6:29492000-29493000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:29492000-29493200	Enhancers	Primary hematopoietic stem cells	blood

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