Variant report

Variant	rs11970406
Chromosome Location	chr6:29526254-29526255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11970429	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11970475	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16895067	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16895070	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17184255	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2076484	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2076486	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2076487	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2272991	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2294744	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2294746	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3025657	0.82[ASN][1000 genomes]
rs3025669	0.82[ASN][1000 genomes]
rs362531	0.85[ASN][1000 genomes]
rs362532	0.85[ASN][1000 genomes]
rs57241384	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58008302	0.82[ASN][1000 genomes]
rs59731351	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59802757	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60219685	0.82[ASN][1000 genomes]
rs64036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456964	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6908631	0.82[ASN][1000 genomes]
rs6913746	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6915177	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6920668	0.82[ASN][1000 genomes]
rs6931702	0.82[ASN][1000 genomes]
rs6933331	0.82[ASN][1000 genomes]
rs73402729	0.87[EUR][1000 genomes]
rs73402731	0.81[EUR][1000 genomes]
rs73402733	0.87[EUR][1000 genomes]
rs73402748	0.82[ASN][1000 genomes]
rs73402770	0.82[ASN][1000 genomes]
rs73402788	0.85[ASN][1000 genomes]
rs7739905	0.82[ASN][1000 genomes]
rs7757931	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9258130	0.82[ASN][1000 genomes]
rs9258132	0.82[ASN][1000 genomes]
rs9461536	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461538	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9468551	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9501677	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29524000-29526400	Weak transcription	Spleen	Spleen
2	chr6:29525200-29528000	Active TSS	GM12878-XiMat	blood
3	chr6:29525400-29526600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:29525600-29527200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:29525800-29526400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
6	chr6:29526000-29527200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:29526000-29527600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:29526200-29526600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
9	chr6:29526200-29526600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:29526200-29526600	Flanking Active TSS	Liver	Liver
11	chr6:29526200-29526800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:29526200-29528200	Enhancers	H9 Cell Line	embryonic stem cell

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