Variant report

Variant	rs58211986
Chromosome Location	chr6:29442931-29442932
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10484547	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16894919	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs16894964	0.88[ASN][1000 genomes]
rs16894967	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16894969	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17184114	0.87[ASN][1000 genomes]
rs2066951	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2073148	0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2107189	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3025657	0.84[ASN][1000 genomes]
rs3025669	0.84[ASN][1000 genomes]
rs57396831	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58008302	0.84[ASN][1000 genomes]
rs60219685	0.84[ASN][1000 genomes]
rs6456951	0.84[AFR][1000 genomes]
rs6907104	0.80[ASN][1000 genomes]
rs6908631	0.84[ASN][1000 genomes]
rs6913746	0.81[ASN][1000 genomes]
rs6920668	0.84[ASN][1000 genomes]
rs6925408	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6925744	0.90[ASN][1000 genomes]
rs6925869	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6931702	0.84[ASN][1000 genomes]
rs6933331	0.84[ASN][1000 genomes]
rs72500877	0.90[ASN][1000 genomes]
rs73400915	0.84[AFR][1000 genomes]
rs73402748	0.84[ASN][1000 genomes]
rs73402770	0.84[ASN][1000 genomes]
rs73402788	0.81[ASN][1000 genomes]
rs7738548	0.84[AFR][1000 genomes]
rs7739905	0.84[ASN][1000 genomes]
rs7739937	0.92[ASN][1000 genomes]
rs7746356	0.86[AFR][1000 genomes]
rs9468551	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830624	chr6:29274525-29445565	Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29442600-29443600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:29442800-29443200	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links