Variant report

Variant	rs16894919
Chromosome Location	chr6:29412222-29412223
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29410503..29413985-chr6:29414850..29417910,3	K562	blood:
2	chr6:29411902..29413831-chr6:29418034..29419543,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10484547	0.94[ASN][1000 genomes]
rs10946992	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16894921	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16894927	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16894929	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16894932	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16894964	0.83[ASN][1000 genomes]
rs16894967	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs16894969	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17184114	0.82[ASN][1000 genomes]
rs2066951	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2073148	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2074468	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2107189	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs57396831	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs57994627	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58211986	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs60194987	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs61224854	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6456951	0.81[EUR][1000 genomes]
rs6906897	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6907104	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6925408	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6925744	0.84[ASN][1000 genomes]
rs6925869	0.91[ASN][1000 genomes]
rs6934737	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs72500877	0.84[ASN][1000 genomes]
rs73400915	0.81[EUR][1000 genomes]
rs7738548	0.81[EUR][1000 genomes]
rs7738722	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7738736	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7739243	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7739937	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830624	chr6:29274525-29445565	Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29412200-29412600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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