Variant report
| Variant | rs6925744 |
|---|---|
| Chromosome Location | chr6:29446689-29446690 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:13)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:13 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr6:29446459-29446920 | MCF-7 | breast: | n/a | chr6:29446683-29446694 |
| 2 | CEBPB | chr6:29446497-29446878 | H1-hESC | embryonic stem cell: | n/a | chr6:29446683-29446694 |
| 3 | CEBPB | chr6:29446497-29446881 | HepG2 | liver: | n/a | chr6:29446683-29446694 |
| 4 | CEBPB | chr6:29446495-29446878 | IMR90 | lung: | n/a | chr6:29446683-29446694 |
| 5 | CEBPB | chr6:29446554-29446877 | A549 | lung: | n/a | chr6:29446683-29446694 |
| 6 | CEBPB | chr6:29446483-29446932 | K562 | blood: | n/a | chr6:29446683-29446694 |
| 7 | CEBPB | chr6:29446581-29446887 | ECC-1 | luminal epithelium: | n/a | chr6:29446683-29446694 |
| 8 | CEBPB | chr6:29446443-29446969 | MCF-7 | breast: | n/a | chr6:29446683-29446694 |
| 9 | CEBPB | chr6:29446488-29446990 | A549 | lung: | n/a | chr6:29446683-29446694 |
| 10 | CEBPB | chr6:29446494-29446887 | A549 | lung: | n/a | chr6:29446683-29446694 |
| 11 | CEBPB | chr6:29446548-29446769 | K562 | blood: | n/a | chr6:29446683-29446694 |
| 12 | CEBPB | chr6:29446448-29447033 | K562 | blood: | n/a | chr6:29446683-29446694 |
| 13 | CEBPB | chr6:29446613-29446744 | HepG2 | liver: | n/a | chr6:29446683-29446694 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| MAS1LP1 | TF binding region |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10484547 | 0.90[ASN][1000 genomes] |
| rs16894919 | 0.84[ASN][1000 genomes] |
| rs16894964 | 0.98[ASN][1000 genomes] |
| rs16894967 | 0.90[ASN][1000 genomes] |
| rs16894969 | 0.90[ASN][1000 genomes] |
| rs17184114 | 0.97[ASN][1000 genomes] |
| rs2066951 | 0.90[ASN][1000 genomes] |
| rs2073148 | 0.84[ASN][1000 genomes] |
| rs2107189 | 0.88[ASN][1000 genomes] |
| rs3025657 | 0.94[ASN][1000 genomes] |
| rs3025669 | 0.94[ASN][1000 genomes] |
| rs362531 | 0.85[ASN][1000 genomes] |
| rs362532 | 0.85[ASN][1000 genomes] |
| rs57396831 | 0.87[ASN][1000 genomes] |
| rs58008302 | 0.94[ASN][1000 genomes] |
| rs58211986 | 0.90[ASN][1000 genomes] |
| rs60219685 | 0.94[ASN][1000 genomes] |
| rs6908631 | 0.94[ASN][1000 genomes] |
| rs6920668 | 0.94[ASN][1000 genomes] |
| rs6925408 | 0.90[ASN][1000 genomes] |
| rs6925869 | 0.85[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6931702 | 0.94[ASN][1000 genomes] |
| rs6933331 | 0.94[ASN][1000 genomes] |
| rs72500877 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73402748 | 0.94[ASN][1000 genomes] |
| rs73402770 | 0.94[ASN][1000 genomes] |
| rs73402788 | 0.91[ASN][1000 genomes] |
| rs7739905 | 0.94[ASN][1000 genomes] |
| rs7739937 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3424039 | chr6:29439297-29504564 | Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs6925744 | ZNRD1 | cis | lymphoblastoid | seeQTL |
| rs6925744 | HLA-F | cis | lymphoblastoid | seeQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
