Variant report

Variant	rs9261318
Chromosome Location	chr6:30048478-30048479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30041813..30043406-chr6:30046381..30048644,2	MCF-7	breast:

Extended variants
information (count: 93 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1048412	0.88[ASN][1000 genomes]
rs2074479	0.88[ASN][1000 genomes]
rs2074480	0.88[ASN][1000 genomes]
rs2074481	0.88[ASN][1000 genomes]
rs2074482	0.88[ASN][1000 genomes]
rs2286405	0.82[ASN][1000 genomes]
rs2301753	0.88[ASN][1000 genomes]
rs2301754	0.90[ASN][1000 genomes]
rs2394256	0.82[ASN][1000 genomes]
rs2394257	0.86[ASN][1000 genomes]
rs2394734	0.83[ASN][1000 genomes]
rs3734835	0.82[ASN][1000 genomes]
rs3765604	0.82[ASN][1000 genomes]
rs3765606	0.82[ASN][1000 genomes]
rs3807034	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3807035	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3869067	0.82[ASN][1000 genomes]
rs3869068	0.82[ASN][1000 genomes]
rs3893530	0.82[ASN][1000 genomes]
rs4448133	0.82[ASN][1000 genomes]
rs6902691	0.82[ASN][1000 genomes]
rs6911467	0.82[ASN][1000 genomes]
rs6919617	0.82[ASN][1000 genomes]
rs6926792	0.82[ASN][1000 genomes]
rs6931776	0.82[ASN][1000 genomes]
rs7738475	0.82[ASN][1000 genomes]
rs7742417	0.82[ASN][1000 genomes]
rs7742871	0.82[ASN][1000 genomes]
rs7746866	0.82[ASN][1000 genomes]
rs7751116	0.82[ASN][1000 genomes]
rs7758512	0.82[ASN][1000 genomes]
rs7760299	0.82[ASN][1000 genomes]
rs7770520	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7770546	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8347	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261105	0.82[ASN][1000 genomes]
rs9261110	0.82[ASN][1000 genomes]
rs9261111	0.82[ASN][1000 genomes]
rs9261113	0.82[ASN][1000 genomes]
rs9261115	0.82[ASN][1000 genomes]
rs9261116	0.82[ASN][1000 genomes]
rs9261128	0.83[ASN][1000 genomes]
rs9261129	0.82[ASN][1000 genomes]
rs9261137	0.82[ASN][1000 genomes]
rs9261145	0.82[ASN][1000 genomes]
rs9261149	0.82[ASN][1000 genomes]
rs9261150	0.82[ASN][1000 genomes]
rs9261154	0.82[ASN][1000 genomes]
rs9261162	0.82[ASN][1000 genomes]
rs9261163	0.82[ASN][1000 genomes]
rs9261170	0.82[ASN][1000 genomes]
rs9261174	0.82[ASN][1000 genomes]
rs9261183	0.82[ASN][1000 genomes]
rs9261185	0.82[ASN][1000 genomes]
rs9261186	0.82[ASN][1000 genomes]
rs9261187	0.82[ASN][1000 genomes]
rs9261188	0.82[ASN][1000 genomes]
rs9261189	0.82[ASN][1000 genomes]
rs9261195	0.82[ASN][1000 genomes]
rs9261198	0.82[ASN][1000 genomes]
rs9261199	0.82[ASN][1000 genomes]
rs9261200	0.82[ASN][1000 genomes]
rs9261204	0.82[ASN][1000 genomes]
rs9261205	0.82[ASN][1000 genomes]
rs9261206	0.84[ASN][1000 genomes]
rs9261209	0.82[ASN][1000 genomes]
rs9261210	0.82[ASN][1000 genomes]
rs9261216	0.82[ASN][1000 genomes]
rs9261217	0.82[ASN][1000 genomes]
rs9261221	0.82[ASN][1000 genomes]
rs9261222	0.82[ASN][1000 genomes]
rs9261291	0.88[ASN][1000 genomes]
rs9261292	0.88[ASN][1000 genomes]
rs9261294	0.88[ASN][1000 genomes]
rs9261295	0.88[ASN][1000 genomes]
rs9261297	0.88[ASN][1000 genomes]
rs9261298	0.88[ASN][1000 genomes]
rs9261299	0.88[ASN][1000 genomes]
rs9261300	0.88[ASN][1000 genomes]
rs9261302	0.88[ASN][1000 genomes]
rs9261306	0.83[ASN][1000 genomes]
rs9261307	0.83[ASN][1000 genomes]
rs9261309	0.83[ASN][1000 genomes]
rs9261310	0.83[ASN][1000 genomes]
rs9261311	0.83[ASN][1000 genomes]
rs9261366	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9261368	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9261370	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9261371	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9261373	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031115	chr6:29934199-30058223	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv538172	chr6:29934199-30058223	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv432866	chr6:30026321-30080921	Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9261318	C6orf12	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30048000-30058400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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