Variant report
Variant | rs3807035 |
---|---|
Chromosome Location | chr6:30044827-30044828 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
No data |
(count:3 , 50 per page) page:
1
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
RNF39 | TF binding region |
ENSG00000252901 | Chromatin interaction |
ENSG00000066379 | Chromatin interaction |
ENSG00000204623 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1048412 | 0.99[ASN][1000 genomes] |
rs10947051 | 0.81[AFR][1000 genomes] |
rs10947052 | 0.81[AFR][1000 genomes] |
rs11969687 | 0.81[AFR][1000 genomes] |
rs17187210 | 0.86[ASN][1000 genomes] |
rs2074479 | 0.99[ASN][1000 genomes] |
rs2074480 | 0.99[ASN][1000 genomes] |
rs2074481 | 0.99[ASN][1000 genomes] |
rs2074482 | 0.99[ASN][1000 genomes] |
rs2286405 | 0.93[ASN][1000 genomes] |
rs2301753 | 0.99[ASN][1000 genomes] |
rs2301754 | 0.97[ASN][1000 genomes] |
rs2394256 | 0.93[ASN][1000 genomes] |
rs2394257 | 0.88[ASN][1000 genomes] |
rs2394734 | 0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs2394735 | 0.81[AFR][1000 genomes] |
rs3734835 | 0.93[ASN][1000 genomes] |
rs3765604 | 0.93[ASN][1000 genomes] |
rs3765606 | 0.93[ASN][1000 genomes] |
rs3807032 | 0.81[AFR][1000 genomes] |
rs3807033 | 0.81[AFR][1000 genomes] |
rs3807034 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3869067 | 0.93[ASN][1000 genomes] |
rs3869068 | 0.93[ASN][1000 genomes] |
rs3893530 | 0.93[ASN][1000 genomes] |
rs4448133 | 0.93[ASN][1000 genomes] |
rs57518619 | 0.81[AFR][1000 genomes] |
rs58099508 | 0.81[AFR][1000 genomes] |
rs6902691 | 0.93[ASN][1000 genomes] |
rs6905157 | 0.90[ASN][1000 genomes] |
rs6910507 | 0.84[ASN][1000 genomes] |
rs6910517 | 0.86[ASN][1000 genomes] |
rs6910898 | 0.86[ASN][1000 genomes] |
rs6911279 | 0.86[ASN][1000 genomes] |
rs6911467 | 0.93[ASN][1000 genomes] |
rs6911737 | 0.86[ASN][1000 genomes] |
rs6912080 | 0.86[ASN][1000 genomes] |
rs6912154 | 0.88[ASN][1000 genomes] |
rs6912877 | 0.80[ASN][1000 genomes] |
rs6919617 | 0.93[ASN][1000 genomes] |
rs6922640 | 0.88[ASN][1000 genomes] |
rs6926792 | 0.93[ASN][1000 genomes] |
rs6930993 | 0.86[ASN][1000 genomes] |
rs6931776 | 0.93[ASN][1000 genomes] |
rs6941318 | 0.87[ASN][1000 genomes] |
rs7738475 | 0.93[ASN][1000 genomes] |
rs7742417 | 0.93[ASN][1000 genomes] |
rs7742871 | 0.93[ASN][1000 genomes] |
rs7746866 | 0.93[ASN][1000 genomes] |
rs7750514 | 0.85[ASN][1000 genomes] |
rs7751116 | 0.93[ASN][1000 genomes] |
rs7758512 | 0.93[ASN][1000 genomes] |
rs7760299 | 0.93[ASN][1000 genomes] |
rs7768179 | 0.85[ASN][1000 genomes] |
rs7770520 | 0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7770546 | 0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs8347 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs9260951 | 0.84[ASN][1000 genomes] |
rs9260959 | 0.85[ASN][1000 genomes] |
rs9260960 | 0.86[ASN][1000 genomes] |
rs9260961 | 0.85[ASN][1000 genomes] |
rs9260963 | 0.86[ASN][1000 genomes] |
rs9260964 | 0.86[ASN][1000 genomes] |
rs9260965 | 0.86[ASN][1000 genomes] |
rs9260966 | 0.86[ASN][1000 genomes] |
rs9260967 | 0.86[ASN][1000 genomes] |
rs9260968 | 0.86[ASN][1000 genomes] |
rs9260970 | 0.86[ASN][1000 genomes] |
rs9260971 | 0.86[ASN][1000 genomes] |
rs9260972 | 0.86[ASN][1000 genomes] |
rs9260974 | 0.86[ASN][1000 genomes] |
rs9260975 | 0.86[ASN][1000 genomes] |
rs9260977 | 0.86[ASN][1000 genomes] |
rs9260978 | 0.86[ASN][1000 genomes] |
rs9260979 | 0.86[ASN][1000 genomes] |
rs9260980 | 0.83[ASN][1000 genomes] |
rs9260982 | 0.86[ASN][1000 genomes] |
rs9260987 | 0.86[ASN][1000 genomes] |
rs9260990 | 0.84[ASN][1000 genomes] |
rs9260994 | 0.86[ASN][1000 genomes] |
rs9260995 | 0.86[ASN][1000 genomes] |
rs9260996 | 0.86[ASN][1000 genomes] |
rs9260999 | 0.84[ASN][1000 genomes] |
rs9261000 | 0.86[ASN][1000 genomes] |
rs9261001 | 0.80[ASN][1000 genomes] |
rs9261003 | 0.86[ASN][1000 genomes] |
rs9261004 | 0.86[ASN][1000 genomes] |
rs9261008 | 0.85[ASN][1000 genomes] |
rs9261009 | 0.86[ASN][1000 genomes] |
rs9261010 | 0.86[ASN][1000 genomes] |
rs9261013 | 0.86[ASN][1000 genomes] |
rs9261015 | 0.86[ASN][1000 genomes] |
rs9261016 | 0.86[ASN][1000 genomes] |
rs9261020 | 0.88[ASN][1000 genomes] |
rs9261022 | 0.88[ASN][1000 genomes] |
rs9261023 | 0.88[ASN][1000 genomes] |
rs9261024 | 0.88[ASN][1000 genomes] |
rs9261026 | 0.88[ASN][1000 genomes] |
rs9261031 | 0.87[ASN][1000 genomes] |
rs9261033 | 0.86[ASN][1000 genomes] |
rs9261049 | 0.87[ASN][1000 genomes] |
rs9261060 | 0.88[ASN][1000 genomes] |
rs9261074 | 0.89[ASN][1000 genomes] |
rs9261103 | 0.90[ASN][1000 genomes] |
rs9261105 | 0.93[ASN][1000 genomes] |
rs9261110 | 0.93[ASN][1000 genomes] |
rs9261111 | 0.93[ASN][1000 genomes] |
rs9261113 | 0.93[ASN][1000 genomes] |
rs9261115 | 0.93[ASN][1000 genomes] |
rs9261116 | 0.93[ASN][1000 genomes] |
rs9261128 | 0.91[ASN][1000 genomes] |
rs9261129 | 0.93[ASN][1000 genomes] |
rs9261137 | 0.93[ASN][1000 genomes] |
rs9261145 | 0.93[ASN][1000 genomes] |
rs9261149 | 0.93[ASN][1000 genomes] |
rs9261150 | 0.93[ASN][1000 genomes] |
rs9261154 | 0.93[ASN][1000 genomes] |
rs9261162 | 0.93[ASN][1000 genomes] |
rs9261163 | 0.93[ASN][1000 genomes] |
rs9261170 | 0.93[ASN][1000 genomes] |
rs9261174 | 0.93[ASN][1000 genomes] |
rs9261180 | 0.90[ASN][1000 genomes] |
rs9261183 | 0.93[ASN][1000 genomes] |
rs9261185 | 0.93[ASN][1000 genomes] |
rs9261186 | 0.93[ASN][1000 genomes] |
rs9261187 | 0.93[ASN][1000 genomes] |
rs9261188 | 0.93[ASN][1000 genomes] |
rs9261189 | 0.93[ASN][1000 genomes] |
rs9261195 | 0.93[ASN][1000 genomes] |
rs9261198 | 0.93[ASN][1000 genomes] |
rs9261199 | 0.93[ASN][1000 genomes] |
rs9261200 | 0.93[ASN][1000 genomes] |
rs9261201 | 0.90[ASN][1000 genomes] |
rs9261204 | 0.93[ASN][1000 genomes] |
rs9261205 | 0.93[ASN][1000 genomes] |
rs9261206 | 0.90[ASN][1000 genomes] |
rs9261209 | 0.93[ASN][1000 genomes] |
rs9261210 | 0.93[ASN][1000 genomes] |
rs9261216 | 0.93[ASN][1000 genomes] |
rs9261217 | 0.93[ASN][1000 genomes] |
rs9261221 | 0.93[ASN][1000 genomes] |
rs9261222 | 0.93[ASN][1000 genomes] |
rs9261291 | 0.99[ASN][1000 genomes] |
rs9261292 | 0.99[ASN][1000 genomes] |
rs9261294 | 0.99[ASN][1000 genomes] |
rs9261295 | 0.99[ASN][1000 genomes] |
rs9261297 | 0.99[ASN][1000 genomes] |
rs9261298 | 0.99[ASN][1000 genomes] |
rs9261299 | 0.99[ASN][1000 genomes] |
rs9261300 | 0.99[ASN][1000 genomes] |
rs9261302 | 0.99[ASN][1000 genomes] |
rs9261306 | 0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs9261307 | 0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs9261309 | 0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs9261310 | 0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs9261311 | 0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs9261318 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs9261366 | 0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs9261368 | 0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs9261370 | 0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs9261371 | 0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs9261373 | 0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs9261385 | 0.88[AFR][1000 genomes];0.88[ASN][1000 genomes] |
rs9261388 | 0.87[AFR][1000 genomes];0.88[ASN][1000 genomes] |
rs9261389 | 0.87[AFR][1000 genomes];0.88[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1031115 | chr6:29934199-30058223 | Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 57 gene(s) | inside rSNPs | diseases |
2 | nsv538172 | chr6:29934199-30058223 | Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 57 gene(s) | inside rSNPs | diseases |
3 | nsv432866 | chr6:30026321-30080921 | Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 53 gene(s) | inside rSNPs | diseases |
4 | nsv884049 | chr6:30037353-30047403 | Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:30043000-30045800 | Enhancers | Primary T helper 17 cells PMA-I stimulated | -- |
2 | chr6:30043200-30045800 | Enhancers | Primary T helper memory cells from peripheral blood 2 | blood |
3 | chr6:30043200-30045800 | Enhancers | Primary T helper naive cells from peripheral blood | blood |
4 | chr6:30043400-30045000 | Enhancers | Dnd41 | blood |
5 | chr6:30043600-30045400 | Enhancers | Primary T helper naive cells fromperipheralblood | blood |
6 | chr6:30043600-30045600 | Enhancers | Primary T helper cells fromperipheralblood | blood |
7 | chr6:30043600-30045600 | Enhancers | Primary T cells effector/memory enriched fromperipheralblood | blood |
8 | chr6:30043800-30045800 | Enhancers | Primary T helper memory cells from peripheral blood 1 | blood |
9 | chr6:30044200-30045800 | Enhancers | Primary T cells fromperipheralblood | blood |
10 | chr6:30044200-30045800 | Bivalent Enhancer | HepG2 | liver |
11 | chr6:30044600-30045800 | Enhancers | Primary T helper cells PMA-I stimulated | -- |
12 | chr6:30044600-30045800 | Enhancers | Primary T killer naive cells fromperipheralblood | blood |
13 | chr6:30044600-30045800 | Enhancers | Primary T killer memory cells from peripheral blood | blood |
14 | chr6:30044600-30046600 | Bivalent Enhancer | Primary T cells from cord blood | blood |
15 | chr6:30044800-30045200 | Bivalent Enhancer | Foreskin Keratinocyte Primary Cells skin02 | Skin |
16 | chr6:30044800-30045800 | Bivalent Enhancer | Primary hematopoietic stem cells short term culture | blood |
17 | chr6:30044800-30046400 | Enhancers | Breast Myoepithelial Primary Cells | Breast |