Variant report

Variant	rs2394735
Chromosome Location	chr6:30046376-30046377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30042265..30044438-chr6:30045994..30047534,2	MCF-7	breast:
2	chr6:30044585..30046967-chr6:30097709..30100269,2	MCF-7	breast:
3	chr6:30044892..30047064-chr6:30055499..30057098,2	MCF-7	breast:
4	chr6:30046314..30047956-chr6:30068316..30070912,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204618	Chromatin interaction
ENSG00000252901	Chromatin interaction

Extended variants
information (count: 194 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:190)

rs_ID	r²[population]
rs10807060	0.93[ASN][1000 genomes]
rs10947040	0.88[ASN][1000 genomes]
rs10947042	0.90[ASN][1000 genomes]
rs10947043	0.91[ASN][1000 genomes]
rs10947045	0.93[ASN][1000 genomes]
rs10947046	0.93[ASN][1000 genomes]
rs10947047	0.93[ASN][1000 genomes]
rs10947051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1108053	0.81[ASN][1000 genomes]
rs1110448	0.81[ASN][1000 genomes]
rs11751331	0.84[ASN][1000 genomes]
rs11751554	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11753431	0.93[ASN][1000 genomes]
rs11753939	0.99[ASN][1000 genomes]
rs11753957	0.93[ASN][1000 genomes]
rs11753960	0.93[ASN][1000 genomes]
rs11754605	0.93[ASN][1000 genomes]
rs11754620	0.91[ASN][1000 genomes]
rs11755337	0.82[ASN][1000 genomes]
rs11755374	0.84[ASN][1000 genomes]
rs11755549	0.93[ASN][1000 genomes]
rs11755853	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11755961	0.84[ASN][1000 genomes]
rs11755966	0.84[ASN][1000 genomes]
rs11755984	0.84[ASN][1000 genomes]
rs11755992	0.84[ASN][1000 genomes]
rs11756025	0.82[ASN][1000 genomes]
rs11757750	0.82[ASN][1000 genomes]
rs11757792	0.82[ASN][1000 genomes]
rs11758493	0.84[ASN][1000 genomes]
rs11758516	1.00[ASN][1000 genomes]
rs11759388	0.93[ASN][1000 genomes]
rs11759891	0.82[ASN][1000 genomes]
rs11760176	0.93[ASN][1000 genomes]
rs11962771	0.93[ASN][1000 genomes]
rs11964113	0.90[ASN][1000 genomes]
rs11965379	0.99[ASN][1000 genomes]
rs11965458	0.93[ASN][1000 genomes]
rs11965524	0.93[ASN][1000 genomes]
rs11965540	0.99[ASN][1000 genomes]
rs11965585	0.93[ASN][1000 genomes]
rs11965659	0.93[ASN][1000 genomes]
rs11967317	0.93[ASN][1000 genomes]
rs11967331	0.93[ASN][1000 genomes]
rs11967911	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11968367	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11968434	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11969687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12110437	0.88[ASN][1000 genomes]
rs12111210	0.90[ASN][1000 genomes]
rs1264695	0.81[ASN][1000 genomes]
rs1264696	0.81[ASN][1000 genomes]
rs1264702	0.83[ASN][1000 genomes]
rs12661053	0.93[ASN][1000 genomes]
rs12661411	0.84[ASN][1000 genomes]
rs12661609	0.93[ASN][1000 genomes]
rs12662336	0.84[ASN][1000 genomes]
rs12662947	0.84[ASN][1000 genomes]
rs12662967	0.84[ASN][1000 genomes]
rs12663252	0.93[ASN][1000 genomes]
rs12663534	1.00[ASN][1000 genomes]
rs12664166	0.86[ASN][1000 genomes]
rs12664794	0.93[ASN][1000 genomes]
rs12664967	0.87[ASN][1000 genomes]
rs12665444	0.91[ASN][1000 genomes]
rs165256	0.85[ASN][1000 genomes]
rs17180759	0.82[ASN][1000 genomes]
rs17180794	0.84[ASN][1000 genomes]
rs17180864	0.88[ASN][1000 genomes]
rs17186930	0.84[ASN][1000 genomes]
rs17186937	0.84[ASN][1000 genomes]
rs17186944	0.84[ASN][1000 genomes]
rs17186979	0.84[ASN][1000 genomes]
rs17187021	0.85[ASN][1000 genomes]
rs17187077	0.84[ASN][1000 genomes]
rs17187141	0.84[ASN][1000 genomes]
rs17187252	0.88[ASN][1000 genomes]
rs17187349	0.88[ASN][1000 genomes]
rs17187488	0.93[ASN][1000 genomes]
rs17187523	0.93[ASN][1000 genomes]
rs17187791	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17187805	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17193851	0.93[ASN][1000 genomes]
rs17193886	0.96[ASN][1000 genomes]
rs17194153	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17194160	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17194174	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2021163	0.82[ASN][1000 genomes]
rs2246199	0.81[ASN][1000 genomes]
rs2275851	0.90[ASN][1000 genomes]
rs2285805	0.99[ASN][1000 genomes]
rs2735074	0.81[ASN][1000 genomes]
rs28454792	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs28698859	0.91[ASN][1000 genomes]
rs28771211	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2894006	0.88[ASN][1000 genomes]
rs3188482	0.99[ASN][1000 genomes]
rs34894339	0.84[ASN][1000 genomes]
rs35144883	0.84[ASN][1000 genomes]
rs35685401	0.81[ASN][1000 genomes]
rs35763150	0.93[ASN][1000 genomes]
rs3734830	0.84[ASN][1000 genomes]
rs3734831	0.82[ASN][1000 genomes]
rs3734833	0.84[ASN][1000 genomes]
rs3734834	0.84[ASN][1000 genomes]
rs3765608	0.93[ASN][1000 genomes]
rs3807032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3807033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3807035	0.81[AFR][1000 genomes]
rs4313034	0.80[ASN][1000 genomes]
rs55760574	0.84[ASN][1000 genomes]
rs56015532	0.84[ASN][1000 genomes]
rs56052612	0.81[ASN][1000 genomes]
rs56066609	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs57035982	0.84[ASN][1000 genomes]
rs57080532	0.84[ASN][1000 genomes]
rs57195817	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57518619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57680173	0.84[ASN][1000 genomes]
rs57927905	0.82[ASN][1000 genomes]
rs58099508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58161185	0.84[ASN][1000 genomes]
rs58314476	0.93[ASN][1000 genomes]
rs58555592	0.93[ASN][1000 genomes]
rs58858573	0.88[ASN][1000 genomes]
rs58867136	0.84[ASN][1000 genomes]
rs58980848	0.91[ASN][1000 genomes]
rs60265332	0.93[ASN][1000 genomes]
rs60418878	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60477028	0.93[ASN][1000 genomes]
rs60587228	0.84[ASN][1000 genomes]
rs61666432	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61704409	0.84[ASN][1000 genomes]
rs6457138	0.93[ASN][1000 genomes]
rs6457149	0.80[ASN][1000 genomes]
rs6902901	0.93[ASN][1000 genomes]
rs6911583	0.88[ASN][1000 genomes]
rs6912001	0.93[ASN][1000 genomes]
rs6917877	0.88[ASN][1000 genomes]
rs6928966	0.93[ASN][1000 genomes]
rs6931672	0.93[ASN][1000 genomes]
rs6932091	0.93[ASN][1000 genomes]
rs6933897	0.93[ASN][1000 genomes]
rs6940552	0.93[ASN][1000 genomes]
rs6940956	0.90[ASN][1000 genomes]
rs72502507	0.91[ASN][1000 genomes]
rs72502509	0.91[ASN][1000 genomes]
rs73410503	0.81[ASN][1000 genomes]
rs73410518	0.82[ASN][1000 genomes]
rs73410524	0.81[ASN][1000 genomes]
rs73410525	0.84[ASN][1000 genomes]
rs73410528	0.84[ASN][1000 genomes]
rs73414461	0.93[ASN][1000 genomes]
rs73414465	0.93[ASN][1000 genomes]
rs73416498	0.93[ASN][1000 genomes]
rs73416501	0.93[ASN][1000 genomes]
rs73420421	0.93[ASN][1000 genomes]
rs73420434	0.93[ASN][1000 genomes]
rs73420439	0.93[ASN][1000 genomes]
rs73424274	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73428121	0.84[ASN][1000 genomes]
rs73428122	0.84[ASN][1000 genomes]
rs73428125	0.84[ASN][1000 genomes]
rs73428152	0.84[ASN][1000 genomes]
rs73725904	0.84[ASN][1000 genomes]
rs73725908	0.81[ASN][1000 genomes]
rs73725910	0.82[ASN][1000 genomes]
rs73725912	0.81[ASN][1000 genomes]
rs73725917	0.84[ASN][1000 genomes]
rs73725950	0.84[ASN][1000 genomes]
rs73725953	0.93[ASN][1000 genomes]
rs73725970	0.93[ASN][1000 genomes]
rs73725984	0.93[ASN][1000 genomes]
rs73728107	0.99[ASN][1000 genomes]
rs7742712	0.93[ASN][1000 genomes]
rs7742799	0.93[ASN][1000 genomes]
rs7746555	0.92[ASN][1000 genomes]
rs7749793	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7750582	0.82[ASN][1000 genomes]
rs7753935	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7754005	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7762851	0.93[ASN][1000 genomes]
rs7764237	0.93[ASN][1000 genomes]
rs7771071	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8347	0.81[AFR][1000 genomes]
rs916569	0.81[ASN][1000 genomes]
rs916570	0.81[ASN][1000 genomes]
rs9261134	0.93[ASN][1000 genomes]
rs9280880	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031115	chr6:29934199-30058223	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv538172	chr6:29934199-30058223	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv432866	chr6:30026321-30080921	Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	nsv884049	chr6:30037353-30047403	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2394735	ZNRD1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30044600-30046600	Bivalent Enhancer	Primary T cells from cord blood	blood
2	chr6:30044800-30046400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:30045600-30047000	Enhancers	Dnd41	blood

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