Variant report

Variant	rs11755853
Chromosome Location	chr6:30053073-30053074
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30041669..30045289-chr6:30052962..30056751,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204618	Chromatin interaction

Extended variants
information (count: 171 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:168)

rs_ID	r²[population]
rs10807060	0.91[ASN][1000 genomes]
rs10947040	0.86[ASN][1000 genomes]
rs10947042	0.87[ASN][1000 genomes]
rs10947043	0.88[ASN][1000 genomes]
rs10947045	0.91[ASN][1000 genomes]
rs10947046	0.91[ASN][1000 genomes]
rs10947047	0.91[ASN][1000 genomes]
rs10947051	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10947052	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1108053	0.81[ASN][1000 genomes]
rs1110448	0.81[ASN][1000 genomes]
rs11751331	0.81[ASN][1000 genomes]
rs11751554	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11753431	0.91[ASN][1000 genomes]
rs11753939	0.96[ASN][1000 genomes]
rs11753957	0.91[ASN][1000 genomes]
rs11753960	0.91[ASN][1000 genomes]
rs11754605	0.91[ASN][1000 genomes]
rs11754620	0.89[ASN][1000 genomes]
rs11755374	0.81[ASN][1000 genomes]
rs11755549	0.91[ASN][1000 genomes]
rs11755961	0.81[ASN][1000 genomes]
rs11755966	0.81[ASN][1000 genomes]
rs11755984	0.81[ASN][1000 genomes]
rs11755992	0.81[ASN][1000 genomes]
rs11758493	0.81[ASN][1000 genomes]
rs11758516	0.97[ASN][1000 genomes]
rs11759388	0.91[ASN][1000 genomes]
rs11760176	0.91[ASN][1000 genomes]
rs11962771	0.91[ASN][1000 genomes]
rs11964113	0.87[ASN][1000 genomes]
rs11965379	0.96[ASN][1000 genomes]
rs11965458	0.91[ASN][1000 genomes]
rs11965524	0.91[ASN][1000 genomes]
rs11965540	0.96[ASN][1000 genomes]
rs11965585	0.91[ASN][1000 genomes]
rs11965659	0.91[ASN][1000 genomes]
rs11967317	0.91[ASN][1000 genomes]
rs11967331	0.91[ASN][1000 genomes]
rs11967911	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11968367	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11968434	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11969687	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12110437	0.86[ASN][1000 genomes]
rs12111210	0.87[ASN][1000 genomes]
rs1264695	0.81[ASN][1000 genomes]
rs1264696	0.81[ASN][1000 genomes]
rs1264702	0.83[ASN][1000 genomes]
rs12661053	0.91[ASN][1000 genomes]
rs12661411	0.81[ASN][1000 genomes]
rs12661609	0.91[ASN][1000 genomes]
rs12662336	0.81[ASN][1000 genomes]
rs12662947	0.81[ASN][1000 genomes]
rs12662967	0.81[ASN][1000 genomes]
rs12663252	0.91[ASN][1000 genomes]
rs12663534	0.97[ASN][1000 genomes]
rs12664166	0.84[ASN][1000 genomes]
rs12664794	0.91[ASN][1000 genomes]
rs12664967	0.85[ASN][1000 genomes]
rs12665444	0.88[ASN][1000 genomes]
rs165256	0.85[ASN][1000 genomes]
rs17180794	0.81[ASN][1000 genomes]
rs17180864	0.86[ASN][1000 genomes]
rs17186930	0.81[ASN][1000 genomes]
rs17186937	0.81[ASN][1000 genomes]
rs17186944	0.81[ASN][1000 genomes]
rs17186979	0.81[ASN][1000 genomes]
rs17187021	0.82[ASN][1000 genomes]
rs17187077	0.81[ASN][1000 genomes]
rs17187141	0.81[ASN][1000 genomes]
rs17187252	0.86[ASN][1000 genomes]
rs17187349	0.86[ASN][1000 genomes]
rs17187488	0.91[ASN][1000 genomes]
rs17187523	0.91[ASN][1000 genomes]
rs17187791	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17187805	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17193851	0.91[ASN][1000 genomes]
rs17193886	0.93[ASN][1000 genomes]
rs17194146	0.85[AFR][1000 genomes]
rs17194153	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17194160	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17194174	0.86[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2275851	0.87[ASN][1000 genomes]
rs2285805	0.96[ASN][1000 genomes]
rs2394735	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28454792	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs28698859	0.88[ASN][1000 genomes]
rs28771211	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28780081	0.80[AFR][1000 genomes]
rs2894006	0.86[ASN][1000 genomes]
rs3188482	0.96[ASN][1000 genomes]
rs34894339	0.81[ASN][1000 genomes]
rs35144883	0.81[ASN][1000 genomes]
rs35763150	0.91[ASN][1000 genomes]
rs3734830	0.81[ASN][1000 genomes]
rs3734833	0.81[ASN][1000 genomes]
rs3734834	0.81[ASN][1000 genomes]
rs3765608	0.91[ASN][1000 genomes]
rs3807032	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3807033	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55760574	0.81[ASN][1000 genomes]
rs56015532	0.81[ASN][1000 genomes]
rs56066609	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57035982	0.81[ASN][1000 genomes]
rs57080532	0.81[ASN][1000 genomes]
rs57195817	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57518619	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57680173	0.81[ASN][1000 genomes]
rs58099508	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58161185	0.81[ASN][1000 genomes]
rs58314476	0.91[ASN][1000 genomes]
rs58555592	0.91[ASN][1000 genomes]
rs58858573	0.86[ASN][1000 genomes]
rs58867136	0.81[ASN][1000 genomes]
rs58980848	0.88[ASN][1000 genomes]
rs60265332	0.91[ASN][1000 genomes]
rs60418878	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60477028	0.91[ASN][1000 genomes]
rs60587228	0.81[ASN][1000 genomes]
rs61666432	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61704409	0.81[ASN][1000 genomes]
rs6457138	0.91[ASN][1000 genomes]
rs6457149	0.80[ASN][1000 genomes]
rs6902901	0.91[ASN][1000 genomes]
rs6911583	0.86[ASN][1000 genomes]
rs6912001	0.91[ASN][1000 genomes]
rs6917877	0.86[ASN][1000 genomes]
rs6928966	0.91[ASN][1000 genomes]
rs6931672	0.91[ASN][1000 genomes]
rs6932091	0.91[ASN][1000 genomes]
rs6933897	0.91[ASN][1000 genomes]
rs6940552	0.91[ASN][1000 genomes]
rs6940956	0.87[ASN][1000 genomes]
rs72502507	0.88[ASN][1000 genomes]
rs72502509	0.88[ASN][1000 genomes]
rs73410525	0.81[ASN][1000 genomes]
rs73410528	0.81[ASN][1000 genomes]
rs73414461	0.91[ASN][1000 genomes]
rs73414465	0.91[ASN][1000 genomes]
rs73416498	0.91[ASN][1000 genomes]
rs73416501	0.91[ASN][1000 genomes]
rs73420421	0.91[ASN][1000 genomes]
rs73420434	0.91[ASN][1000 genomes]
rs73420439	0.91[ASN][1000 genomes]
rs73424274	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73428121	0.81[ASN][1000 genomes]
rs73428122	0.81[ASN][1000 genomes]
rs73428125	0.81[ASN][1000 genomes]
rs73428152	0.81[ASN][1000 genomes]
rs73725904	0.81[ASN][1000 genomes]
rs73725917	0.81[ASN][1000 genomes]
rs73725950	0.84[ASN][1000 genomes]
rs73725953	0.91[ASN][1000 genomes]
rs73725970	0.91[ASN][1000 genomes]
rs73725984	0.91[ASN][1000 genomes]
rs73728107	0.96[ASN][1000 genomes]
rs7742712	0.91[ASN][1000 genomes]
rs7742799	0.91[ASN][1000 genomes]
rs7746555	0.90[ASN][1000 genomes]
rs7749793	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7753935	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7754005	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7762851	0.91[ASN][1000 genomes]
rs7764237	0.91[ASN][1000 genomes]
rs7771071	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs916569	0.81[ASN][1000 genomes]
rs916570	0.81[ASN][1000 genomes]
rs9261134	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031115	chr6:29934199-30058223	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv538172	chr6:29934199-30058223	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv432866	chr6:30026321-30080921	Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30048000-30058400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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