Variant report

Variant	rs73414461
Chromosome Location	chr6:29974346-29974347
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:26)
CpG islands
(count:122)
Chromatin interactive
region (count:0)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:26 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr6:29974226-29974369	H1-hESC	embryonic stem cell:	n/a	n/a
2	RFX5	chr6:29973774-29974656	IMR90	lung:	n/a	n/a
3	POLR2A	chr6:29974243-29974743	GM12891	blood:	n/a	n/a
4	POU2F2	chr6:29974318-29974773	GM12878	blood:	n/a	n/a
5	TCF3	chr6:29974296-29974665	GM12878	blood:	n/a	n/a
6	POLR2A	chr6:29974311-29974724	GM12878	blood:	n/a	n/a
7	RFX5	chr6:29974339-29974404	Hela-S3	cervix:	n/a	n/a
8	POLR2A	chr6:29974285-29974745	GM12892	blood:	n/a	n/a
9	POLR2A	chr6:29974338-29974409	A549	lung:	n/a	n/a
10	POLR2A	chr6:29974119-29974903	GM12892	blood:	n/a	n/a
11	POLR2A	chr6:29974221-29974750	U87	brain:	n/a	n/a
12	POLR2A	chr6:29974232-29974557	HepG2	liver:	n/a	n/a
13	POLR2A	chr6:29974339-29974404	Hela-S3	cervix:	n/a	n/a
14	POLR2A	chr6:29974317-29974682	Hela-S3	cervix:	n/a	n/a
15	POLR2A	chr6:29974289-29974569	Hela-S3	cervix:	n/a	n/a
16	POLR2A	chr6:29974212-29974836	GM12878	blood:	n/a	n/a
17	POLR2A	chr6:29974263-29974774	GM12878	blood:	n/a	n/a
18	POLR2A	chr6:29974226-29974791	GM12892	blood:	n/a	n/a
19	SIN3A	chr6:29974045-29974346	H1-hESC	embryonic stem cell:	n/a	n/a
20	POLR2A	chr6:29974206-29974692	GM18951	blood:	n/a	n/a
21	POLR2A	chr6:29974321-29974721	GM12891	blood:	n/a	n/a
22	POLR2A	chr6:29974221-29974744	U87	brain:	n/a	n/a
23	HEY1	chr6:29974246-29974653	HepG2	liver:	n/a	n/a
24	POLR2A	chr6:29974075-29974830	GM12892	blood:	n/a	n/a
25	POLR2A	chr6:29974268-29974848	GM12878	blood:	n/a	n/a
26	POLR2A	chr6:29974290-29974801	GM12891	blood:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:29974319-29974369	MCF10A-Er-Src	breast:	n/a
2	chr6:29974306-29974356	Caco-2	colon:	n/a
3	chr6:29974306-29974356	HEK293	kidney:	embryo
4	chr6:29974306-29974356	ovcar-3	ovarian:	n/a
5	chr6:29974319-29974369	Hela-S3	cervix:	n/a
6	chr6:29974319-29974369	GM12891	blood:	n/a
7	chr6:29974319-29974369	HepG2	liver:	n/a
8	chr6:29974306-29974356	RPTEC	kidney:	n/a
9	chr6:29974319-29974369	HAEpiC	amniotic membrane:	n/a
10	chr6:29974319-29974369	HEK293	kidney:	embryo
11	chr6:29974306-29974356	NH-A	brain:	n/a
12	chr6:29974319-29974369	K562	blood:	n/a
13	chr6:29974319-29974369	AG09309	skin:	n/a
14	chr6:29974306-29974356	AG04450	lung:	fetal
15	chr6:29974319-29974369	HNPCEpiC	eye:	n/a
16	chr6:29974319-29974369	GM06990	blood:	n/a
17	chr6:29974306-29974356	HCM	heart:	n/a
18	chr6:29974306-29974356	GM12878	blood:	n/a
19	chr6:29974319-29974369	SK-N-SH	brain:	n/a
20	chr6:29974306-29974356	ProgFib	skin:	n/a
21	chr6:29974319-29974369	CMK	blood:	n/a
22	chr6:29974319-29974369	BE2_C	brain:	n/a
23	chr6:29974319-29974369	Caco-2	colon:	n/a
24	chr6:29974319-29974369	SK-N-MC	brain:	n/a
25	chr6:29974319-29974369	HCPEpiC	choroid plexus:	n/a
26	chr6:29974306-29974356	SK-N-SH	brain:	n/a
27	chr6:29974306-29974356	HRPEpiC	eye:	n/a
28	chr6:29974306-29974356	HEEpiC	esophagus:	n/a
29	chr6:29974319-29974369	HRE	kidney:	n/a
30	chr6:29974319-29974369	ProgFib	skin:	n/a
31	chr6:29974306-29974356	AG04449	skin:	fetal
32	chr6:29974306-29974356	H1-hESC	embryonic stem cell:	embryo
33	chr6:29974319-29974369	Jurkat	blood:	n/a
34	chr6:29974319-29974369	HCT-116	colon:	n/a
35	chr6:29974319-29974369	NT2-D1	testis:	n/a
36	chr6:29974319-29974369	HMEC	breast:	n/a
37	chr6:29974319-29974369	HIPEpiC	eye:	n/a
38	chr6:29974306-29974356	NHDF-neo	bronchial:	n/a
39	chr6:29974306-29974356	K562	blood:	n/a
40	chr6:29974306-29974356	NT2-D1	testis:	n/a
41	chr6:29974319-29974369	HRPEpiC	eye:	n/a
42	chr6:29974319-29974369	SKMC	muscle:	n/a
43	chr6:29974306-29974356	GM12891	blood:	n/a
44	chr6:29974306-29974356	Hela-S3	cervix:	n/a
45	chr6:29974306-29974356	BJ	skin:	n/a
46	chr6:29974306-29974356	SAEC	small airway:	n/a
47	chr6:29974306-29974356	IMR90	lung:	fetal
48	chr6:29974319-29974369	AG04449	skin:	fetal
49	chr6:29974306-29974356	LNCaP	prostate:	n/a
50	chr6:29974319-29974369	SAEC	small airway:	n/a

No data

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RNF39-6	chr6:29973898-29974893	NONHSAT108579
2	lnc-ZNRD1-4	chr6:29974217-29974446	NR_024240

No data

Variant related genes	Relation type
HLA-J	TF binding region
HLA-J	CpG island

Extended variants
information (count: 222 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:209)

rs_ID	r²[population]
rs10807060	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947040	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10947042	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10947043	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10947045	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947046	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947047	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947051	0.93[ASN][1000 genomes]
rs10947052	0.93[ASN][1000 genomes]
rs11751331	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11751554	0.88[ASN][1000 genomes]
rs11753431	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753939	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11753957	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753960	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754605	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754620	0.97[ASN][1000 genomes]
rs11755337	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11755374	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11755549	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755853	0.91[ASN][1000 genomes]
rs11755961	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11755966	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11755984	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11755992	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11756025	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11757750	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11757792	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11758493	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11758516	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11759388	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759891	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11760176	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962771	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963840	0.94[AFR][1000 genomes]
rs11964113	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11965379	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11965452	0.94[AFR][1000 genomes]
rs11965458	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965524	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965540	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11965585	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965659	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966447	0.94[AFR][1000 genomes]
rs11966449	0.94[AFR][1000 genomes]
rs11967317	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967331	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968367	0.88[ASN][1000 genomes]
rs11968434	0.88[ASN][1000 genomes]
rs11969687	0.90[ASN][1000 genomes]
rs12110437	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12111210	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12661053	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661394	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12661402	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12661411	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12661609	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662336	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12662947	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12662967	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12663252	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12663534	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12664166	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12664794	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664967	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12665171	0.87[EUR][1000 genomes]
rs12665186	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12665444	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs165256	0.91[ASN][1000 genomes]
rs17180542	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17180577	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17180759	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17180794	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17180864	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17186930	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17186937	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17186944	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17186979	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17187021	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17187077	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17187141	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17187252	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17187349	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17187488	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17187523	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17193851	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17193886	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1974574	0.84[ASN][1000 genomes]
rs2108691	0.83[ASN][1000 genomes]
rs2245952	0.82[ASN][1000 genomes]
rs2246199	0.87[ASN][1000 genomes]
rs2246642	0.84[ASN][1000 genomes]
rs2275851	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2285805	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2394735	0.93[ASN][1000 genomes]
rs2517809	0.84[ASN][1000 genomes]
rs2517810	0.84[ASN][1000 genomes]
rs2735074	0.87[ASN][1000 genomes]
rs28570682	0.94[AFR][1000 genomes]
rs28698859	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28749538	0.82[ASN][1000 genomes]
rs28771211	0.90[ASN][1000 genomes]
rs2894006	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3188482	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34513540	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34894339	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35144883	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35356382	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35480831	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35574636	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35685401	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35763150	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35796574	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3734830	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3734831	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3734833	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3734834	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3757328	0.94[AFR][1000 genomes]
rs3757333	0.94[AFR][1000 genomes]
rs3765608	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3807032	0.93[ASN][1000 genomes]
rs3807033	0.93[ASN][1000 genomes]
rs423808	0.84[ASN][1000 genomes]
rs4313034	0.86[ASN][1000 genomes]
rs55760574	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56015532	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56052612	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56066609	0.83[ASN][1000 genomes]
rs56216735	0.94[AFR][1000 genomes]
rs57035982	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57080532	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57195817	0.86[ASN][1000 genomes]
rs57518619	0.93[ASN][1000 genomes]
rs57680173	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57799064	0.94[AFR][1000 genomes]
rs57927905	0.88[ASN][1000 genomes]
rs58099508	0.93[ASN][1000 genomes]
rs58161185	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58314476	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58555592	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58858573	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58867136	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58980848	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60265332	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60418878	0.87[ASN][1000 genomes]
rs60477028	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60587228	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61230487	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61666432	0.88[ASN][1000 genomes]
rs61704409	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6457137	0.94[AFR][1000 genomes]
rs6457138	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902901	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911583	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6912001	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917877	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6928966	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931672	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932091	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933897	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940552	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940956	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72502507	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72502509	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73410503	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73410515	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73410518	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73410524	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73410525	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73410528	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73410530	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73414465	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73416498	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73416501	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73420421	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73420434	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73420439	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73420484	0.94[AFR][1000 genomes]
rs73424274	0.90[ASN][1000 genomes]
rs73428121	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73428122	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73428125	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73428151	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73428152	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73725904	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73725908	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73725910	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73725912	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73725917	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73725919	0.84[EUR][1000 genomes]
rs73725921	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73725930	0.87[EUR][1000 genomes]
rs73725950	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73725953	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73725970	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73725984	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73728107	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7742712	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742799	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746555	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7750582	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7762851	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764237	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771071	0.88[ASN][1000 genomes]
rs9261134	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261281	0.92[AFR][1000 genomes]
rs9280880	0.82[ASN][1000 genomes]
rs9767125	0.86[AFR][1000 genomes]
rs9767139	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427749	chr6:29659525-29975144	Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv2758040	chr6:29792434-29975144	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv2759412	chr6:29792434-29975144	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	esv3391180	chr6:29798321-29977430	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv508398	chr6:29825777-30003403	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	esv3373906	chr6:29884407-29977070	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	esv2641340	chr6:29913287-29978544	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	esv3378806	chr6:29913464-29978179	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
9	esv3496792	chr6:29913818-29977071	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	esv3496793	chr6:29913818-29977071	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	nsv1031115	chr6:29934199-30058223	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
12	nsv538172	chr6:29934199-30058223	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
13	nsv601475	chr6:29963179-29977973	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29964400-29974400	Weak transcription	Hela-S3	cervix
2	chr6:29973600-29974400	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr6:29973600-29974400	Flanking Active TSS	HepG2	liver
4	chr6:29973800-29974400	Active TSS	Colonic Mucosa	Colon
5	chr6:29973800-29974400	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr6:29973800-29974600	Active TSS	Brain Cingulate Gyrus	brain
7	chr6:29973800-29974800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:29973800-29974800	Active TSS	Rectal Smooth Muscle	rectum
9	chr6:29973800-29974800	Bivalent/Poised TSS	Thymus	Thymus
10	chr6:29973800-29975000	Active TSS	Brain Anterior Caudate	brain
11	chr6:29973800-29975000	Flanking Bivalent TSS/Enh	Osteobl	bone
12	chr6:29973800-29975200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:29973800-29975200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:29973800-29975200	Active TSS	Aorta	Aorta
15	chr6:29973800-29975200	Bivalent/Poised TSS	NHDF-Ad	bronchial
16	chr6:29973800-29975200	Bivalent/Poised TSS	NHLF	lung
17	chr6:29973800-29975400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:29973800-29975400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:29973800-29975400	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
20	chr6:29973800-29975400	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr6:29973800-29975600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
22	chr6:29974000-29974400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
23	chr6:29974000-29974400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
24	chr6:29974000-29974400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
25	chr6:29974000-29974400	Bivalent/Poised TSS	Fetal Intestine Large	intestine
26	chr6:29974000-29974400	Active TSS	Placenta Amnion	Placenta Amnion
27	chr6:29974000-29974400	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
28	chr6:29974000-29974600	Active TSS	Brain Angular Gyrus	brain
29	chr6:29974000-29974600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr6:29974000-29974600	Bivalent/Poised TSS	Fetal Thymus	thymus
31	chr6:29974000-29974600	Active TSS	Lung	lung
32	chr6:29974000-29974800	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:29974000-29974800	Active TSS	Breast Myoepithelial Primary Cells	Breast
34	chr6:29974000-29974800	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
35	chr6:29974000-29974800	Active TSS	Brain Substantia Nigra	brain
36	chr6:29974000-29974800	Active TSS	Colon Smooth Muscle	Colon
37	chr6:29974000-29974800	Flanking Active TSS	Spleen	Spleen
38	chr6:29974000-29975000	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
39	chr6:29974000-29975000	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr6:29974000-29975000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
41	chr6:29974000-29975000	Flanking Bivalent TSS/Enh	Placenta	Placenta
42	chr6:29974000-29975000	Active TSS	Left Ventricle	heart
43	chr6:29974000-29975000	Active TSS	Psoas Muscle	Psoas
44	chr6:29974000-29975200	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr6:29974000-29975200	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
46	chr6:29974000-29975200	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
47	chr6:29974000-29975200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr6:29974000-29975200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
49	chr6:29974000-29975200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
50	chr6:29974000-29975200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach

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