Variant report

Variant	rs11751554
Chromosome Location	chr6:30058777-30058778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30037349..30040198-chr6:30056751..30058986,2	MCF-7	breast:
2	chr6:30041884..30044302-chr6:30056325..30059544,3	MCF-7	breast:
3	chr6:30058142..30060356-chr6:30062997..30064640,2	MCF-7	breast:
4	chr6:30058600..30061539-chr6:30062741..30064895,3	MCF-7	breast:
5	chr6:30054428..30057425-chr6:30058219..30060222,2	MCF-7	breast:
6	chr6:30039555..30048654-chr6:30056865..30065735,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000252901	Chromatin interaction
ENSG00000204618	Chromatin interaction

Extended variants
information (count: 149 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:148)

rs_ID	r²[population]
rs10807060	0.88[ASN][1000 genomes]
rs10947040	0.84[ASN][1000 genomes]
rs10947042	0.85[ASN][1000 genomes]
rs10947043	0.86[ASN][1000 genomes]
rs10947045	0.88[ASN][1000 genomes]
rs10947046	0.88[ASN][1000 genomes]
rs10947047	0.88[ASN][1000 genomes]
rs10947051	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10947052	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1108052	0.83[ASN][1000 genomes]
rs1108053	0.86[ASN][1000 genomes]
rs1110448	0.86[ASN][1000 genomes]
rs1156533	0.82[ASN][1000 genomes]
rs11753431	0.88[ASN][1000 genomes]
rs11753939	0.93[ASN][1000 genomes]
rs11753957	0.88[ASN][1000 genomes]
rs11753960	0.88[ASN][1000 genomes]
rs11754605	0.88[ASN][1000 genomes]
rs11754620	0.86[ASN][1000 genomes]
rs11755549	0.88[ASN][1000 genomes]
rs11755853	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11758516	0.95[ASN][1000 genomes]
rs11759388	0.88[ASN][1000 genomes]
rs11760176	0.88[ASN][1000 genomes]
rs11962771	0.88[ASN][1000 genomes]
rs11964113	0.85[ASN][1000 genomes]
rs11965379	0.93[ASN][1000 genomes]
rs11965458	0.88[ASN][1000 genomes]
rs11965524	0.88[ASN][1000 genomes]
rs11965540	0.93[ASN][1000 genomes]
rs11965585	0.88[ASN][1000 genomes]
rs11965659	0.88[ASN][1000 genomes]
rs11967317	0.88[ASN][1000 genomes]
rs11967331	0.88[ASN][1000 genomes]
rs11967911	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11968367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969687	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12110437	0.84[ASN][1000 genomes]
rs12111210	0.85[ASN][1000 genomes]
rs1264694	0.83[ASN][1000 genomes]
rs1264695	0.86[ASN][1000 genomes]
rs1264696	0.86[ASN][1000 genomes]
rs1264702	0.88[ASN][1000 genomes]
rs12661053	0.88[ASN][1000 genomes]
rs12661609	0.88[ASN][1000 genomes]
rs12661731	0.82[ASN][1000 genomes]
rs12663252	0.88[ASN][1000 genomes]
rs12663534	0.95[ASN][1000 genomes]
rs12664166	0.81[ASN][1000 genomes]
rs12664794	0.88[ASN][1000 genomes]
rs12664967	0.82[ASN][1000 genomes]
rs12665444	0.86[ASN][1000 genomes]
rs165256	0.83[ASN][1000 genomes]
rs17180864	0.84[ASN][1000 genomes]
rs17187021	0.80[ASN][1000 genomes]
rs17187252	0.84[ASN][1000 genomes]
rs17187349	0.83[ASN][1000 genomes]
rs17187488	0.88[ASN][1000 genomes]
rs17187523	0.88[ASN][1000 genomes]
rs17187791	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17187805	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17193851	0.88[ASN][1000 genomes]
rs17193886	0.91[ASN][1000 genomes]
rs17194146	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs17194153	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17194160	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17194174	0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2072110	0.84[ASN][1000 genomes]
rs2275851	0.85[ASN][1000 genomes]
rs2285805	0.93[ASN][1000 genomes]
rs2394735	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2523994	0.84[ASN][1000 genomes]
rs28454792	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28698859	0.86[ASN][1000 genomes]
rs28771211	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28780078	0.82[ASN][1000 genomes]
rs28780079	0.82[ASN][1000 genomes]
rs28780080	0.82[ASN][1000 genomes]
rs28780081	0.83[ASN][1000 genomes]
rs28780082	0.81[ASN][1000 genomes]
rs2894006	0.83[ASN][1000 genomes]
rs3188482	0.93[ASN][1000 genomes]
rs35763150	0.88[ASN][1000 genomes]
rs3765608	0.88[ASN][1000 genomes]
rs3807032	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3807033	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56066609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57195817	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57518619	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58099508	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58314476	0.88[ASN][1000 genomes]
rs58555592	0.88[ASN][1000 genomes]
rs58858573	0.84[ASN][1000 genomes]
rs58980848	0.86[ASN][1000 genomes]
rs60265332	0.88[ASN][1000 genomes]
rs60418878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60477028	0.88[ASN][1000 genomes]
rs61666432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457138	0.88[ASN][1000 genomes]
rs6457149	0.85[ASN][1000 genomes]
rs6902901	0.88[ASN][1000 genomes]
rs6911583	0.84[ASN][1000 genomes]
rs6912001	0.88[ASN][1000 genomes]
rs6917877	0.83[ASN][1000 genomes]
rs6928966	0.88[ASN][1000 genomes]
rs6931672	0.88[ASN][1000 genomes]
rs6932091	0.88[ASN][1000 genomes]
rs6933897	0.88[ASN][1000 genomes]
rs6940552	0.88[ASN][1000 genomes]
rs6940956	0.85[ASN][1000 genomes]
rs72502507	0.86[ASN][1000 genomes]
rs72502509	0.86[ASN][1000 genomes]
rs73414461	0.88[ASN][1000 genomes]
rs73414465	0.88[ASN][1000 genomes]
rs73416498	0.88[ASN][1000 genomes]
rs73416501	0.88[ASN][1000 genomes]
rs73420421	0.88[ASN][1000 genomes]
rs73420434	0.88[ASN][1000 genomes]
rs73420439	0.88[ASN][1000 genomes]
rs73424274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73725953	0.88[ASN][1000 genomes]
rs73725970	0.88[ASN][1000 genomes]
rs73725984	0.88[ASN][1000 genomes]
rs73728107	0.93[ASN][1000 genomes]
rs7741418	0.82[ASN][1000 genomes]
rs7742712	0.88[ASN][1000 genomes]
rs7742799	0.88[ASN][1000 genomes]
rs7746555	0.87[ASN][1000 genomes]
rs7749793	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7753935	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7754005	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7761563	0.82[ASN][1000 genomes]
rs7762851	0.88[ASN][1000 genomes]
rs7764237	0.88[ASN][1000 genomes]
rs7765810	0.82[ASN][1000 genomes]
rs7770520	0.81[AFR][1000 genomes]
rs7770546	0.81[AFR][1000 genomes]
rs7771071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs916569	0.86[ASN][1000 genomes]
rs916570	0.86[ASN][1000 genomes]
rs9261134	0.88[ASN][1000 genomes]
rs9261366	0.80[AFR][1000 genomes]
rs9261368	0.81[AFR][1000 genomes]
rs9261370	0.81[AFR][1000 genomes]
rs9261371	0.81[AFR][1000 genomes]
rs9261373	0.81[AFR][1000 genomes]
rs9261384	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432866	chr6:30026321-30080921	Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30055600-30059400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:30056400-30059200	Weak transcription	NHEK	skin
3	chr6:30056400-30059400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:30058400-30059600	Bivalent Enhancer	Fetal Thymus	thymus
5	chr6:30058400-30062200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:30058600-30060400	Enhancers	NHDF-Ad	bronchial
7	chr6:30058600-30061000	Enhancers	Fetal Intestine Small	intestine
8	chr6:30058600-30061400	Enhancers	Fetal Intestine Large	intestine

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