Variant report

Variant	rs11965540
Chromosome Location	chr6:30042057-30042058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:30027015..30030813-chr6:30040823..30045193,4	K562	blood:
2	chr6:30039276..30042217-chr6:30067253..30069841,2	K562	blood:
3	chr6:30041813..30043406-chr6:30046381..30048644,2	MCF-7	breast:
4	chr6:30041669..30045289-chr6:30052962..30056751,3	MCF-7	breast:
5	chr6:30041751..30043519-chr6:30060494..30062224,2	K562	blood:
6	chr6:30041884..30044302-chr6:30056325..30059544,3	MCF-7	breast:
7	chr6:30041144..30044066-chr6:30293669..30296230,2	MCF-7	breast:
8	chr6:30040732..30043488-chr6:30062276..30064354,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000270604	Chromatin interaction
ENSG00000204599	Chromatin interaction
ENSG00000204623	Chromatin interaction
ENSG00000231074	Chromatin interaction
ENSG00000066379	Chromatin interaction
ENSG00000252901	Chromatin interaction

Extended variants
information (count: 217 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:213)

rs_ID	r²[population]
rs10807060	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10947040	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10947042	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10947043	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10947045	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10947046	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10947047	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10947051	0.99[ASN][1000 genomes]
rs10947052	0.99[ASN][1000 genomes]
rs1108053	0.80[ASN][1000 genomes]
rs1110448	0.80[ASN][1000 genomes]
rs11751331	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11751554	0.93[ASN][1000 genomes]
rs11753431	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11753939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753957	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11753960	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11754605	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11754620	0.92[ASN][1000 genomes]
rs11755337	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11755374	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11755549	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11755853	0.96[ASN][1000 genomes]
rs11755961	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11755966	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11755984	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11755992	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11756025	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11757750	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11757792	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11758493	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11758516	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11759388	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11759891	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11760176	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11962771	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11963840	0.96[AFR][1000 genomes]
rs11964113	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11965379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965452	0.96[AFR][1000 genomes]
rs11965458	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11965524	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11965585	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11965659	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11966447	0.96[AFR][1000 genomes]
rs11966449	0.96[AFR][1000 genomes]
rs11967317	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11967331	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11967911	0.82[ASN][1000 genomes]
rs11968367	0.93[ASN][1000 genomes]
rs11968434	0.93[ASN][1000 genomes]
rs11969687	0.95[ASN][1000 genomes]
rs12110437	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12111210	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1264695	0.80[ASN][1000 genomes]
rs1264696	0.80[ASN][1000 genomes]
rs1264702	0.82[ASN][1000 genomes]
rs12661053	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12661394	0.81[ASN][1000 genomes]
rs12661402	0.81[ASN][1000 genomes]
rs12661411	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12661609	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12662336	0.98[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12662947	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12662967	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12663252	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12663534	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12664166	0.98[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12664794	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12664967	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12665186	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12665444	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs165256	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs17180542	0.81[ASN][1000 genomes]
rs17180577	0.81[ASN][1000 genomes]
rs17180759	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17180794	0.92[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17180864	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17186930	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17186937	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17186944	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17186979	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17187021	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs17187077	0.92[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17187141	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17187252	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17187349	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17187488	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17187523	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17187791	0.82[ASN][1000 genomes]
rs17187805	0.82[ASN][1000 genomes]
rs17193851	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17193886	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17194153	0.82[ASN][1000 genomes]
rs17194160	0.82[ASN][1000 genomes]
rs17194174	0.82[ASN][1000 genomes]
rs2021163	0.83[ASN][1000 genomes]
rs2246199	0.82[ASN][1000 genomes]
rs2275851	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2285805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2394735	0.99[ASN][1000 genomes]
rs2735074	0.82[ASN][1000 genomes]
rs28454792	0.83[ASN][1000 genomes]
rs28570682	0.96[AFR][1000 genomes]
rs28698859	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28771211	0.95[ASN][1000 genomes]
rs2894006	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3188482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34894339	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs35144883	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs35356382	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs35480831	0.81[ASN][1000 genomes]
rs35685401	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs35763150	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3734830	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs3734831	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs3734833	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs3734834	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs3757328	0.96[AFR][1000 genomes]
rs3757333	0.96[AFR][1000 genomes]
rs3765608	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3807032	0.99[ASN][1000 genomes]
rs3807033	0.99[ASN][1000 genomes]
rs4313034	0.81[ASN][1000 genomes]
rs55760574	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs56015532	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs56052612	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs56066609	0.86[ASN][1000 genomes]
rs56216735	0.96[AFR][1000 genomes]
rs57035982	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs57080532	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs57195817	0.91[ASN][1000 genomes]
rs57518619	0.99[ASN][1000 genomes]
rs57680173	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs57799064	0.96[AFR][1000 genomes]
rs57927905	0.83[ASN][1000 genomes]
rs58099508	0.99[ASN][1000 genomes]
rs58161185	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs58314476	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58555592	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58858573	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs58867136	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs58980848	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60265332	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60418878	0.92[ASN][1000 genomes]
rs60477028	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60587228	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs61230487	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61666432	0.93[ASN][1000 genomes]
rs61704409	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6457137	0.96[AFR][1000 genomes]
rs6457138	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6902901	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6911583	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6912001	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6917877	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6928966	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6931672	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6932091	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6933897	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6940552	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6940956	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72502507	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72502509	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73410503	0.82[ASN][1000 genomes]
rs73410515	0.86[AFR][1000 genomes]
rs73410518	0.98[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs73410524	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs73410525	0.97[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73410528	0.98[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73410530	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73414461	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73414465	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73416498	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73416501	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73420421	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73420434	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73420439	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73420484	0.96[AFR][1000 genomes]
rs73424274	0.95[ASN][1000 genomes]
rs73428121	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73428122	0.85[ASN][1000 genomes]
rs73428125	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73428151	0.85[AFR][1000 genomes]
rs73428152	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73725904	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73725908	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs73725910	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs73725912	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs73725917	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73725921	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73725950	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73725953	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73725970	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73725984	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73728107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742712	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7742799	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7746555	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7749793	0.82[ASN][1000 genomes]
rs7750582	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7753935	0.82[ASN][1000 genomes]
rs7754005	0.82[ASN][1000 genomes]
rs7762851	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7764237	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7771071	0.93[ASN][1000 genomes]
rs916569	0.80[ASN][1000 genomes]
rs916570	0.80[ASN][1000 genomes]
rs9261134	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261281	0.95[AFR][1000 genomes]
rs9280880	0.82[ASN][1000 genomes]
rs9767125	0.88[AFR][1000 genomes]
rs9767139	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031115	chr6:29934199-30058223	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv538172	chr6:29934199-30058223	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv432866	chr6:30026321-30080921	Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	nsv884049	chr6:30037353-30047403	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11965540	ZNRD1	Cis_1M	lymphoblastoid	RTeQTL
rs11965540	ZNRD1	cis	multi-tissue	Pritchard
rs11965540	C6orf12	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30036800-30042400	Weak transcription	Hela-S3	cervix
2	chr6:30038400-30044000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr6:30038800-30043400	Weak transcription	Dnd41	blood
4	chr6:30039600-30042200	Weak transcription	Right Atrium	heart
5	chr6:30041200-30042200	Enhancers	Pancreas	Pancrea
6	chr6:30041200-30043600	Active TSS	Esophagus	oesophagus
7	chr6:30041400-30042200	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
8	chr6:30041400-30043000	Flanking Bivalent TSS/Enh	HepG2	liver
9	chr6:30041600-30042200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
10	chr6:30041600-30042400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
11	chr6:30041600-30042600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:30041600-30042600	Bivalent Enhancer	Fetal Intestine Large	intestine
13	chr6:30041800-30042200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
14	chr6:30041800-30042200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
15	chr6:30041800-30042200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:30041800-30042200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:30041800-30042200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:30041800-30042200	Enhancers	Ovary	ovary
19	chr6:30041800-30042200	Flanking Bivalent TSS/Enh	NHEK	skin
20	chr6:30041800-30042400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
21	chr6:30041800-30042400	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:30041800-30042400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
23	chr6:30041800-30042400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:30041800-30042400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
25	chr6:30041800-30042400	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr6:30041800-30042400	Bivalent Enhancer	Fetal Intestine Small	intestine
27	chr6:30041800-30042400	Bivalent Enhancer	Fetal Lung	lung
28	chr6:30041800-30042400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
29	chr6:30041800-30042400	Bivalent Enhancer	Fetal Stomach	stomach
30	chr6:30041800-30042600	Bivalent Enhancer	Brain Hippocampus Middle	brain
31	chr6:30041800-30042600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
32	chr6:30041800-30043000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
33	chr6:30041800-30043400	Bivalent Enhancer	Fetal Brain Male	brain
34	chr6:30041800-30043400	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
35	chr6:30041800-30043600	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:30041800-30043600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:30041800-30044000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
38	chr6:30041800-30044200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
39	chr6:30042000-30042200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:30042000-30042200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:30042000-30042200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr6:30042000-30042200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
43	chr6:30042000-30042200	Bivalent/Poised TSS	Primary T cells from cord blood	blood
44	chr6:30042000-30042200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:30042000-30042200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:30042000-30042200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:30042000-30042200	Bivalent Enhancer	Colonic Mucosa	Colon
48	chr6:30042000-30042200	Bivalent Enhancer	Placenta	Placenta
49	chr6:30042000-30042200	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
50	chr6:30042000-30042200	Bivalent Enhancer	Rectal Smooth Muscle	rectum

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