Variant report

Variant	rs9283588
Chromosome Location	chr3:133874566-133874567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133869963..133871897-chr3:133873500..133875119,2	K562	blood:
2	chr3:133874050..133876554-chr3:133881002..133883004,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10935104	0.83[EUR][1000 genomes]
rs1131262	0.91[CHB][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13080318	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs35322473	0.80[ASN][1000 genomes]
rs3890774	0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4072180	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4324466	0.93[ASN][1000 genomes]
rs4547696	1.00[CEU][hapmap]
rs4682664	0.91[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4682666	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4682668	0.91[CHB][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4682669	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56073423	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6439465	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6439466	0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6762690	0.91[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6776502	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6800143	0.93[ASN][1000 genomes]
rs6808085	0.90[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7355922	0.81[ASN][1000 genomes]
rs7609611	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7622046	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9812461	0.89[ASN][1000 genomes]
rs9818714	0.91[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9823873	0.91[CHB][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9825808	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9827728	0.80[ASN][1000 genomes]
rs9832732	0.90[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9839819	0.91[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9853568	0.90[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9856298	0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9856792	0.91[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9858069	0.90[CHB][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9858450	0.91[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9858707	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133862800-133876800	Weak transcription	Small Intestine	intestine
2	chr3:133863000-133876800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:133863000-133876800	Weak transcription	Brain Angular Gyrus	brain
4	chr3:133863000-133902200	Weak transcription	GM12878-XiMat	blood
5	chr3:133863200-133877000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:133863200-133877400	Weak transcription	Psoas Muscle	Psoas
7	chr3:133864000-133881000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:133864200-133899800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr3:133864600-133892400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:133864800-133876800	Weak transcription	Brain Substantia Nigra	brain
11	chr3:133866200-133898600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:133867400-133879200	Strong transcription	Primary T cells from cord blood	blood
13	chr3:133867400-133880200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:133868400-133877400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr3:133868400-133879200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:133868600-133875600	Weak transcription	HSMMtube	muscle
17	chr3:133869200-133879000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr3:133869400-133878400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:133869400-133879000	Strong transcription	Fetal Muscle Leg	muscle
20	chr3:133869400-133880000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:133869400-133881000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr3:133869600-133878400	Strong transcription	HMEC	breast
23	chr3:133869600-133879200	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr3:133869600-133887600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr3:133869800-133884800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr3:133870000-133874800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr3:133870200-133885800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:133870400-133879000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr3:133870400-133879000	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr3:133870400-133879200	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr3:133870400-133879200	Strong transcription	Dnd41	blood
32	chr3:133870400-133879400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:133870400-133879600	Strong transcription	Fetal Intestine Large	intestine
34	chr3:133870600-133878600	Strong transcription	Liver	Liver
35	chr3:133870600-133879000	Strong transcription	Placenta	Placenta
36	chr3:133870600-133885600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:133870800-133874800	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr3:133870800-133876800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr3:133870800-133878200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr3:133870800-133879400	Strong transcription	Primary B cells from cord blood	blood
41	chr3:133870800-133879400	Strong transcription	HSMM	muscle
42	chr3:133870800-133885600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:133871000-133878400	Strong transcription	Stomach Smooth Muscle	stomach
44	chr3:133871000-133879000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr3:133871000-133881200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr3:133871200-133881400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr3:133871400-133877000	Weak transcription	Brain Cingulate Gyrus	brain
48	chr3:133871600-133874600	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr3:133871600-133874800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr3:133871800-133874600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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