Variant report

Variant	rs10935104
Chromosome Location	chr3:133883061-133883062
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133880944..133883730-chr3:133890634..133894226,3	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10935097	0.85[ASN][1000 genomes]
rs1131262	0.93[CEU][hapmap]
rs12635994	1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs13068409	0.92[ASN][1000 genomes]
rs13075720	0.85[ASN][1000 genomes]
rs13099506	0.88[ASN][1000 genomes]
rs28514329	0.86[ASN][1000 genomes]
rs35015318	0.86[ASN][1000 genomes]
rs35111284	0.88[ASN][1000 genomes]
rs35775034	0.92[ASN][1000 genomes]
rs3890774	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs4072180	0.82[EUR][1000 genomes]
rs4077158	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs4077643	0.93[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs4280635	0.93[CHB][hapmap];0.92[ASN][1000 genomes]
rs4404422	0.93[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs4682664	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs4682666	0.84[EUR][1000 genomes]
rs4682668	0.93[CEU][hapmap]
rs56073423	0.82[EUR][1000 genomes]
rs6439464	0.94[ASN][1000 genomes]
rs6439465	0.87[EUR][1000 genomes]
rs6439466	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs6439469	0.86[ASN][1000 genomes]
rs67022177	0.90[ASN][1000 genomes]
rs6762690	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs6776502	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs6783086	0.88[ASN][1000 genomes]
rs6783294	0.93[CHB][hapmap];0.90[ASN][1000 genomes]
rs6786384	0.90[ASN][1000 genomes]
rs6795164	1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs6796404	1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs6804370	0.86[ASN][1000 genomes]
rs6808085	0.93[CEU][hapmap]
rs73215351	0.90[ASN][1000 genomes]
rs7429840	0.85[ASN][1000 genomes]
rs7609611	0.82[EUR][1000 genomes]
rs7620941	0.84[ASN][1000 genomes]
rs7622046	0.82[EUR][1000 genomes]
rs7623609	1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs7639683	1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs7641162	0.88[ASN][1000 genomes]
rs9283588	0.83[EUR][1000 genomes]
rs9809556	0.93[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs9817270	0.82[ASN][1000 genomes]
rs9818714	0.93[CEU][hapmap]
rs9822076	0.93[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs9822469	0.93[CHB][hapmap];0.90[ASN][1000 genomes]
rs9822749	0.92[ASN][1000 genomes]
rs9823873	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs9825808	0.84[EUR][1000 genomes]
rs9829505	0.90[ASN][1000 genomes]
rs9832732	0.92[CEU][hapmap]
rs9839609	0.93[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs9839819	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs9840170	0.81[ASN][1000 genomes]
rs9846664	0.97[ASN][1000 genomes]
rs9846871	0.87[ASN][1000 genomes]
rs9853568	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs9856298	0.93[CEU][hapmap]
rs9856792	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs9858000	0.97[ASN][1000 genomes]
rs9858069	0.90[CEU][hapmap]
rs9858450	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs9859680	0.93[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs9860060	0.87[ASN][1000 genomes]
rs9860268	0.87[ASN][1000 genomes]
rs9865773	0.85[ASN][1000 genomes]
rs9865808	0.92[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs9877899	0.87[ASN][1000 genomes]
rs9880098	0.93[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs9881681	0.82[ASN][1000 genomes]
rs9881896	0.90[ASN][1000 genomes]
rs9882168	0.88[ASN][1000 genomes]
rs9882590	0.92[ASN][1000 genomes]
rs9882927	0.92[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133863000-133902200	Weak transcription	GM12878-XiMat	blood
2	chr3:133864200-133899800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:133864600-133892400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:133866200-133898600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:133869600-133887600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:133869800-133884800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr3:133870200-133885800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:133870600-133885600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:133870800-133885600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:133871800-133919200	Weak transcription	K562	blood
11	chr3:133873400-133891400	Weak transcription	Fetal Brain Female	brain
12	chr3:133873400-133907400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr3:133873600-133890400	Weak transcription	Esophagus	oesophagus
14	chr3:133873800-133892200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr3:133874400-133887800	Weak transcription	Fetal Heart	heart
16	chr3:133874400-133929400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr3:133874600-133892200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:133874600-133933600	Weak transcription	Colonic Mucosa	Colon
19	chr3:133876800-133885800	Strong transcription	Primary B cells from peripheral blood	blood
20	chr3:133877600-133907400	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:133877600-133935200	Weak transcription	Psoas Muscle	Psoas
22	chr3:133877800-133884800	Weak transcription	Brain Germinal Matrix	brain
23	chr3:133877800-133885200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr3:133877800-133894200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr3:133877800-133894400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr3:133877800-133894600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr3:133877800-133920200	Weak transcription	Brain Substantia Nigra	brain
28	chr3:133877800-133950200	Weak transcription	Small Intestine	intestine
29	chr3:133878000-133893000	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr3:133878000-133894400	Weak transcription	NHDF-Ad	bronchial
31	chr3:133878200-133891600	Weak transcription	Brain Anterior Caudate	brain
32	chr3:133878200-133892400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr3:133878200-133892400	Weak transcription	HSMMtube	muscle
34	chr3:133878200-133893400	Weak transcription	Brain Hippocampus Middle	brain
35	chr3:133878200-133901600	Weak transcription	Fetal Brain Male	brain
36	chr3:133878400-133884200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr3:133878400-133884200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr3:133878400-133884200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr3:133878400-133884400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr3:133878400-133884400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr3:133878400-133884600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr3:133878400-133885200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr3:133878400-133887600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr3:133878400-133891600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr3:133878400-133892200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr3:133878400-133893000	Weak transcription	Hela-S3	cervix
47	chr3:133878400-133894400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr3:133878400-133907400	Weak transcription	Brain Angular Gyrus	brain
49	chr3:133878600-133884200	Weak transcription	Liver	Liver
50	chr3:133878600-133884800	Weak transcription	A549	lung

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