Variant report

Variant	rs6795164
Chromosome Location	chr3:133885925-133885926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10935097	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10935104	1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs12635994	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13068409	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13075720	0.88[ASN][1000 genomes]
rs13099506	0.91[ASN][1000 genomes]
rs28514329	0.90[ASN][1000 genomes]
rs35015318	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35111284	0.91[ASN][1000 genomes]
rs35775034	0.95[ASN][1000 genomes]
rs4077158	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4077643	0.93[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs4280635	0.92[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4324466	0.83[EUR][1000 genomes]
rs4404422	0.93[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs6439464	0.98[ASN][1000 genomes]
rs6439469	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67022177	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6783086	0.91[ASN][1000 genomes]
rs6783294	0.93[CHB][hapmap];0.84[JPT][hapmap];0.93[ASN][1000 genomes]
rs6786384	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6796404	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6800143	0.83[EUR][1000 genomes]
rs6804370	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73215351	0.93[ASN][1000 genomes]
rs7429840	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7620941	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7623609	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7639683	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7641162	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9809556	0.93[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs9817270	0.86[ASN][1000 genomes]
rs9822076	0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9822469	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9822749	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9829505	0.93[ASN][1000 genomes]
rs9839609	0.93[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs9840170	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9846664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9846871	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9858000	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9859680	0.93[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs9860060	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9860268	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9865773	0.88[ASN][1000 genomes]
rs9865808	0.92[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs9877899	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9880098	0.93[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs9881681	0.86[ASN][1000 genomes]
rs9881896	0.93[ASN][1000 genomes]
rs9882168	0.91[ASN][1000 genomes]
rs9882590	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9882927	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6795164	RYK	cis	multi-tissue	Pritchard

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133863000-133902200	Weak transcription	GM12878-XiMat	blood
2	chr3:133864200-133899800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:133864600-133892400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:133866200-133898600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:133869600-133887600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:133871800-133919200	Weak transcription	K562	blood
7	chr3:133873400-133891400	Weak transcription	Fetal Brain Female	brain
8	chr3:133873400-133907400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:133873600-133890400	Weak transcription	Esophagus	oesophagus
10	chr3:133873800-133892200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:133874400-133887800	Weak transcription	Fetal Heart	heart
12	chr3:133874400-133929400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr3:133874600-133892200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:133874600-133933600	Weak transcription	Colonic Mucosa	Colon
15	chr3:133877600-133907400	Weak transcription	Colon Smooth Muscle	Colon
16	chr3:133877600-133935200	Weak transcription	Psoas Muscle	Psoas
17	chr3:133877800-133894200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr3:133877800-133894400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr3:133877800-133894600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr3:133877800-133920200	Weak transcription	Brain Substantia Nigra	brain
21	chr3:133877800-133950200	Weak transcription	Small Intestine	intestine
22	chr3:133878000-133893000	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr3:133878000-133894400	Weak transcription	NHDF-Ad	bronchial
24	chr3:133878200-133891600	Weak transcription	Brain Anterior Caudate	brain
25	chr3:133878200-133892400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr3:133878200-133892400	Weak transcription	HSMMtube	muscle
27	chr3:133878200-133893400	Weak transcription	Brain Hippocampus Middle	brain
28	chr3:133878200-133901600	Weak transcription	Fetal Brain Male	brain
29	chr3:133878400-133887600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr3:133878400-133891600	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr3:133878400-133892200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr3:133878400-133893000	Weak transcription	Hela-S3	cervix
33	chr3:133878400-133894400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr3:133878400-133907400	Weak transcription	Brain Angular Gyrus	brain
35	chr3:133878600-133892400	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr3:133878600-133893800	Weak transcription	Right Ventricle	heart
37	chr3:133878800-133887600	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr3:133879000-133887200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr3:133879000-133889200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr3:133879000-133889200	Weak transcription	Pancreas	Pancrea
41	chr3:133879000-133890400	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr3:133879000-133891600	Weak transcription	Lung	lung
43	chr3:133879000-133891600	Weak transcription	Thymus	Thymus
44	chr3:133879000-133891600	Weak transcription	Spleen	Spleen
45	chr3:133879000-133892400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr3:133879000-133892800	Weak transcription	Aorta	Aorta
47	chr3:133879000-133894400	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr3:133879000-133894600	Weak transcription	Gastric	stomach
49	chr3:133879200-133887600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr3:133879200-133887600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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