Variant report

Variant	rs73215351
Chromosome Location	chr3:133863188-133863189
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133858232..133859742-chr3:133862491..133864984,2	MCF-7	breast:
2	chr3:133862684..133865458-chr3:133867741..133869409,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10935097	0.88[ASN][1000 genomes]
rs10935104	0.90[ASN][1000 genomes]
rs12635994	0.86[ASN][1000 genomes]
rs13068409	0.98[ASN][1000 genomes]
rs13075720	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13099506	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28514329	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34331927	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35015318	0.91[ASN][1000 genomes]
rs35111284	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35775034	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4077158	0.86[ASN][1000 genomes]
rs4077643	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4280635	0.98[ASN][1000 genomes]
rs4404422	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6439464	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6439469	0.82[ASN][1000 genomes]
rs67022177	0.86[ASN][1000 genomes]
rs6783086	0.89[ASN][1000 genomes]
rs6783294	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6786384	0.95[ASN][1000 genomes]
rs6795164	0.93[ASN][1000 genomes]
rs6796404	0.86[ASN][1000 genomes]
rs6804370	0.82[ASN][1000 genomes]
rs7429840	0.82[ASN][1000 genomes]
rs7620941	0.81[ASN][1000 genomes]
rs7623609	0.93[ASN][1000 genomes]
rs7639683	0.84[ASN][1000 genomes]
rs7641162	0.84[ASN][1000 genomes]
rs9809556	0.89[ASN][1000 genomes]
rs9817270	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9822076	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9822469	0.86[ASN][1000 genomes]
rs9822749	0.89[ASN][1000 genomes]
rs9829505	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9839609	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9840170	0.85[ASN][1000 genomes]
rs9846664	0.93[ASN][1000 genomes]
rs9846871	0.92[ASN][1000 genomes]
rs9858000	0.93[ASN][1000 genomes]
rs9859680	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9860060	0.92[ASN][1000 genomes]
rs9860268	0.92[ASN][1000 genomes]
rs9865285	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9865773	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9865808	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9877899	0.92[ASN][1000 genomes]
rs9880098	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9881681	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9881896	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9882128	0.94[EUR][1000 genomes]
rs9882168	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9882590	0.98[ASN][1000 genomes]
rs9882927	0.98[ASN][1000 genomes]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133842000-133872600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:133842600-133870600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:133842800-133872000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:133843000-133871200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:133843000-133872600	Weak transcription	Gastric	stomach
6	chr3:133848400-133866400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:133848400-133867400	Weak transcription	Primary T cells from cord blood	blood
8	chr3:133848600-133865400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:133848600-133867600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:133848600-133872600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:133852000-133866000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr3:133853600-133870600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr3:133853600-133871000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr3:133853800-133867400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr3:133854400-133872400	Weak transcription	NHEK	skin
16	chr3:133855400-133871000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:133856400-133872600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr3:133858000-133870800	Weak transcription	Fetal Brain Female	brain
19	chr3:133858000-133871800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr3:133859200-133863400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:133859200-133865800	Weak transcription	Esophagus	oesophagus
22	chr3:133859200-133866000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:133859400-133871200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:133859400-133872600	Weak transcription	Aorta	Aorta
25	chr3:133859600-133864800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:133861000-133867800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr3:133861800-133863400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr3:133862000-133865200	Enhancers	HUVEC	blood vessel
29	chr3:133862200-133870600	Weak transcription	Brain Anterior Caudate	brain
30	chr3:133862600-133863200	Enhancers	HepG2	liver
31	chr3:133862600-133865000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr3:133862600-133869400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr3:133862600-133870400	Weak transcription	Dnd41	blood
34	chr3:133862600-133873600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr3:133862600-133873600	Weak transcription	Fetal Heart	heart
36	chr3:133862800-133863200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr3:133862800-133863200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr3:133862800-133863200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr3:133862800-133863200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr3:133862800-133863200	Enhancers	Fetal Lung	lung
41	chr3:133862800-133863400	Enhancers	Right Atrium	heart
42	chr3:133862800-133863400	Enhancers	Right Ventricle	heart
43	chr3:133862800-133863800	Enhancers	Ovary	ovary
44	chr3:133862800-133863800	Enhancers	Pancreas	Pancrea
45	chr3:133862800-133864000	Enhancers	Adipose Nuclei	Adipose
46	chr3:133862800-133864200	Enhancers	Spleen	Spleen
47	chr3:133862800-133864800	Enhancers	Placenta	Placenta
48	chr3:133862800-133865200	Enhancers	Left Ventricle	heart
49	chr3:133862800-133865400	Enhancers	Lung	lung
50	chr3:133862800-133866200	Enhancers	Fetal Muscle Trunk	muscle

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