Variant report

Variant	rs9840170
Chromosome Location	chr3:133827144-133827145
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10935097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10935104	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs12635994	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs13068409	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13075720	0.90[ASN][1000 genomes]
rs35015318	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35775034	0.80[ASN][1000 genomes]
rs4077158	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs4077643	0.93[CHB][hapmap];0.87[CHD][hapmap]
rs4280635	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4324466	0.90[EUR][1000 genomes]
rs4404422	0.93[CHB][hapmap]
rs6439464	0.82[ASN][1000 genomes]
rs6783294	0.93[CHB][hapmap];0.87[CHD][hapmap]
rs6786384	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6795164	0.84[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6796404	1.00[CHB][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap]
rs6800143	0.89[EUR][1000 genomes]
rs73215351	0.85[ASN][1000 genomes]
rs7623609	1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7639683	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];0.96[MEX][hapmap];0.82[TSI][hapmap];0.81[YRI][hapmap]
rs9809556	0.93[CHB][hapmap]
rs9812461	0.94[EUR][1000 genomes]
rs9817270	0.94[ASN][1000 genomes]
rs9822076	0.93[CHB][hapmap];0.91[CHD][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs9822469	0.85[CEU][hapmap];0.93[CHB][hapmap];0.82[AMR][1000 genomes]
rs9822749	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9839609	0.93[CHB][hapmap]
rs9846664	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9846871	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9858000	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9859680	0.93[CHB][hapmap];0.87[CHD][hapmap]
rs9860060	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9860268	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9865773	0.90[ASN][1000 genomes]
rs9865808	0.92[CHB][hapmap]
rs9877899	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9880098	0.93[CHB][hapmap];0.87[CHD][hapmap]
rs9881681	0.94[ASN][1000 genomes]
rs9882590	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9882927	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965344	chr3:133805086-133862489	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133823400-133830800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:133824600-133827600	Enhancers	Pancreas	Pancrea
3	chr3:133825200-133827600	Enhancers	Fetal Intestine Small	intestine
4	chr3:133826000-133828000	Enhancers	Duodenum Mucosa	Duodenum
5	chr3:133826600-133841600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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