Variant report

Variant	rs9817270
Chromosome Location	chr3:133821617-133821618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10935097	0.98[ASN][1000 genomes]
rs10935104	0.93[CHB][hapmap];0.82[ASN][1000 genomes]
rs12635994	0.93[CHB][hapmap]
rs13068409	0.88[ASN][1000 genomes]
rs13075720	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13099506	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28514329	0.80[ASN][1000 genomes]
rs34331927	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35015318	0.92[ASN][1000 genomes]
rs35111284	0.81[ASN][1000 genomes]
rs35775034	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4077158	0.92[CHB][hapmap]
rs4077643	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs4280635	0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4404422	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs6439464	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6783086	0.81[ASN][1000 genomes]
rs6783294	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6786384	0.88[ASN][1000 genomes]
rs6795164	0.93[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs6796404	0.92[CHB][hapmap]
rs73215351	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7623609	0.92[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs7639683	0.93[CHB][hapmap]
rs9809556	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs9822076	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9822469	0.87[CHB][hapmap]
rs9822749	0.81[ASN][1000 genomes]
rs9829505	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9839609	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs9840170	0.94[ASN][1000 genomes]
rs9846664	0.86[ASN][1000 genomes]
rs9846871	0.93[ASN][1000 genomes]
rs9858000	0.86[ASN][1000 genomes]
rs9859680	0.89[CEU][hapmap];1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs9860060	0.93[ASN][1000 genomes]
rs9860268	0.93[ASN][1000 genomes]
rs9865285	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9865773	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9865808	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9877899	0.93[ASN][1000 genomes]
rs9880098	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs9881681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9881896	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9882128	0.87[EUR][1000 genomes]
rs9882168	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9882590	0.88[ASN][1000 genomes]
rs9882927	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965344	chr3:133805086-133862489	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133821000-133826400	Weak transcription	Right Atrium	heart
2	chr3:133821200-133824600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:133821200-133824600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:133821400-133824600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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