Variant report

Variant	rs9829505
Chromosome Location	chr3:133901733-133901734
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10935097	0.81[ASN][1000 genomes]
rs10935104	0.90[ASN][1000 genomes]
rs12635994	0.95[ASN][1000 genomes]
rs13068409	0.89[ASN][1000 genomes]
rs13075720	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13099506	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28514329	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34331927	0.84[EUR][1000 genomes]
rs35015318	0.83[ASN][1000 genomes]
rs35111284	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35432681	0.86[EUR][1000 genomes]
rs35775034	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4077158	0.95[ASN][1000 genomes]
rs4077643	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4280635	0.89[ASN][1000 genomes]
rs4404422	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6439464	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6439469	0.91[ASN][1000 genomes]
rs67022177	0.95[ASN][1000 genomes]
rs6783086	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6783294	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6786384	0.87[ASN][1000 genomes]
rs6795164	0.93[ASN][1000 genomes]
rs6796404	0.95[ASN][1000 genomes]
rs6804370	0.91[ASN][1000 genomes]
rs73215351	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7429840	0.91[ASN][1000 genomes]
rs7620941	0.80[ASN][1000 genomes]
rs7623609	0.93[ASN][1000 genomes]
rs7639683	0.93[ASN][1000 genomes]
rs7641162	0.93[ASN][1000 genomes]
rs9809556	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9817270	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9822076	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9822469	0.95[ASN][1000 genomes]
rs9822749	0.98[ASN][1000 genomes]
rs9839609	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9846664	0.93[ASN][1000 genomes]
rs9846871	0.84[ASN][1000 genomes]
rs9858000	0.93[ASN][1000 genomes]
rs9859680	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9860060	0.84[ASN][1000 genomes]
rs9860268	0.84[ASN][1000 genomes]
rs9865285	0.82[EUR][1000 genomes]
rs9865773	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9865808	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9877899	0.84[ASN][1000 genomes]
rs9880098	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9881681	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9881896	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882128	0.87[EUR][1000 genomes]
rs9882168	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9882590	0.89[ASN][1000 genomes]
rs9882927	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133863000-133902200	Weak transcription	GM12878-XiMat	blood
2	chr3:133871800-133919200	Weak transcription	K562	blood
3	chr3:133873400-133907400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:133874400-133929400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:133874600-133933600	Weak transcription	Colonic Mucosa	Colon
6	chr3:133877600-133907400	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:133877600-133935200	Weak transcription	Psoas Muscle	Psoas
8	chr3:133877800-133920200	Weak transcription	Brain Substantia Nigra	brain
9	chr3:133877800-133950200	Weak transcription	Small Intestine	intestine
10	chr3:133878400-133907400	Weak transcription	Brain Angular Gyrus	brain
11	chr3:133881800-133908800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr3:133885000-133902400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr3:133885600-133907400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr3:133885600-133919600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr3:133887600-133902800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:133887600-133903400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:133888400-133923600	Weak transcription	Fetal Heart	heart
18	chr3:133888600-133905400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:133893200-133907200	Weak transcription	Brain Anterior Caudate	brain
20	chr3:133893200-133917400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr3:133894400-133912600	Weak transcription	Fetal Thymus	thymus
22	chr3:133894800-133907200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr3:133894800-133912600	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr3:133894800-133917800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:133894800-133917800	Weak transcription	Right Ventricle	heart
26	chr3:133894800-133917800	Weak transcription	Thymus	Thymus
27	chr3:133894800-133935200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr3:133894800-133946800	Weak transcription	Pancreas	Pancrea
29	chr3:133895000-133904600	Weak transcription	HUVEC	blood vessel
30	chr3:133895000-133910600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr3:133895000-133914400	Weak transcription	Brain Hippocampus Middle	brain
32	chr3:133895000-133917200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr3:133895000-133917400	Weak transcription	Esophagus	oesophagus
34	chr3:133895000-133917800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr3:133895000-133918000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr3:133895000-133918000	Weak transcription	Spleen	Spleen
37	chr3:133895000-133918600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr3:133895000-133918800	Weak transcription	Aorta	Aorta
39	chr3:133895000-133950000	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr3:133895000-133950200	Weak transcription	Gastric	stomach
41	chr3:133895200-133902200	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr3:133895200-133904200	Weak transcription	NHDF-Ad	bronchial
43	chr3:133895200-133905200	Weak transcription	HepG2	liver
44	chr3:133895200-133912400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr3:133895200-133919600	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr3:133895200-133927200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr3:133895400-133903200	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr3:133895400-133912600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr3:133895600-133907000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr3:133895600-133912600	Weak transcription	Fetal Muscle Trunk	muscle

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